| Gene | Input weight | Standard | Rank | |
| RARB | 0.25 | 1 | 300 | |
| RUNX2 | - | -1 | 480 | |
| TRPS1 | - | -1 | 707 | |
| SOX5 | 0.25 | 1 | 860 | |
| SOX9 | - | -1 | 970 | |
| RELA | - | - | 1142 | |
| SMAD1 | - | - | 1872 | |
| SOX6 | - | - | 1923 | |
| PTHLH | - | -1 | 1993 | |
| NKX3-2 | - | - | 2620 | |
| SHOX2 | - | - | 2767 | |
| WNT5A | - | - | 3319 | |
| RARA | 0.25 | 1 | 3695 | |
| GLG1 | - | - | 4233 | |
| ZBTB16 | - | - | 4249 | |
| AXIN2 | - | -1 | 4260 | |
| HOXA11 | - | - | 4432 | |
| CARM1 | - | - | 4755 | |
| BMP2 | - | -1 | 4855 | |
| GDF5 | - | -1 | 4882 | |
| HOXD11 | 0.25 | 1 | 5105 | |
| POR | 0.25 | 1 | 5184 | |
| NOG | - | -1 | 5439 | |
| GLI3 | - | -1 | 6261 | |
| FGF18 | - | - | 6382 | |
| BMP4 | - | -1 | 6499 | |
| IHH | - | -1 | 7160 | |
| WNT11 | - | - | 7820 | |
| FRZB | - | - | 8105 | |
| RARG | 0.25 | 1 | 8575 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| SCIN | - | - | 9620 | |
| PKDCC | - | - | 9871 | |
| LEP | 0.25 | 1 | 11864 | |
| WNT9A | - | - | 13365 | |
| CYR61 | - | - | 22574 | |
| SNAI2 | - | -1 | 23962 | |
| BMP1 | - | - | 25134 | |
| EFEMP1 | - | - | 25366 |
GO:0061035
| Name | Description | External IDs |
| RARB | retinoic acid receptor, beta | Entrez:5915  HPRD: 07183  Ensembl: ENSG00000077092  HGNC: 9865  |
| RUNX2 | runt-related transcription factor 2 | Entrez:860  Ensembl: ENSG00000124813  HGNC: 10472  HPRD: 02566  |
| TRPS1 | trichorhinophalangeal syndrome I | Entrez:7227  Ensembl: ENSG00000104447  HGNC: 12340  HPRD: 05091  |
| SOX5 | SRY (sex determining region Y)-box 5 | Entrez:6660  HPRD: 18086  HGNC: 11201  Ensembl: ENSG00000134532  |
| SOX9 | SRY (sex determining region Y)-box 9 | Entrez:6662  HPRD: 06427  HGNC: 11204  Ensembl: ENSG00000125398  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| RARB | retinoic acid receptor, beta | ||||
| RUNX2 | runt-related transcription factor 2 | ||||
| TRPS1 | trichorhinophalangeal syndrome I | ||||
| SOX5 | SRY (sex determining region Y)-box 5 | ||||
| SOX9 | SRY (sex determining region Y)-box 9 |
| Query gene | Gene | Gene description | Edge score |
| RARB | RARB | retinoic acid receptor, beta | |
| RUNX2 | RUNX2 | runt-related transcription factor 2 | |
| TRPS1 | TRPS1 | trichorhinophalangeal syndrome I | |
| SOX5 | SOX5 | SRY (sex determining region Y)-box 5 | |
| SOX9 | SOX9 | SRY (sex determining region Y)-box 9 |