| Gene | Input weight | Standard | Rank | |
| ATP2B2 | 0.5 | 1 | 3 | |
| NIPBL | - | -1 | 7 | |
| SOX11 | - | - | 96 | |
| NEUROD1 | - | -1 | 127 | |
| SATB2 | 0.25 | 1 | 149 | |
| ABR | - | - | 160 | |
| GNAQ | - | - | 189 | |
| SOX2 | - | -1 | 200 | |
| FGFR2 | - | -1 | 237 | |
| SOX4 | - | - | 250 | |
| FGF9 | - | - | 262 | |
| LRP6 | - | - | 279 | |
| BMPR2 | - | -1 | 281 | |
| RARB | 0.25 | 1 | 300 | |
| HIPK1 | - | - | 311 | |
| SFRP1 | - | - | 387 | |
| CHD7 | - | -1 | 416 | |
| PBX1 | - | - | 489 | |
| SALL1 | - | - | 506 | |
| RET | - | -1 | 524 | |
| PCDH8 | - | - | 531 | |
| PFN1 | - | - | 548 | |
| MYCN | - | - | 560 | |
| SP3 | - | - | 562 | |
| PAX2 | - | - | 653 | |
| LHX2 | - | - | 655 | |
| FOXG1 | - | - | 661 | |
| DICER1 | - | -1 | 762 | |
| ZIC3 | - | -1 | 789 | |
| TSC1 | 0.25 | 1 | 790 | |
| SMARCA4 | - | - | 801 | |
| SMAD4 | - | - | 821 | |
| SMAD3 | - | - | 823 | |
| ZIC1 | - | - | 939 | |
| CHRD | - | - | 941 | |
| MBNL1 | - | - | 956 | |
| NR4A3 | - | -1 | 963 | |
| SOX9 | - | -1 | 970 | |
| PTCH1 | - | -1 | 972 | |
| PROX1 | - | - | 997 | |
| MED1 | - | - | 1034 | |
| HIPK2 | - | - | 1051 | |
| HIF1A | - | - | 1075 | |
| CUL3 | 1.0 | 1 | 1093 | |
| BMP7 | - | - | 1137 | |
| BMPR1A | - | - | 1140 | |
| MIB1 | 0.25 | 1 | 1153 | |
| HOXD3 | - | - | 1195 | |
| PCGF2 | - | - | 1217 | |
| LMO4 | - | - | 1244 | |
| MAP3K7 | - | - | 1275 | |
| DLC1 | - | - | 1282 | |
| AMOT | - | - | 1325 | |
| ENAH | - | - | 1348 | |
| HDAC2 | - | - | 1440 | |
| HOXD4 | - | - | 1445 | |
| SPRY2 | - | - | 1454 | |
| LEF1 | - | - | 1499 | |
| LRP4 | - | - | 1500 | |
| ZIC2 | - | -1 | 1609 | |
| RAC1 | - | - | 1617 | |
| ACVR2B | - | -1 | 1676 | |
| CYP26B1 | - | - | 1734 | |
| VANGL2 | - | - | 1793 | |
| BCR | - | -1 | 1839 | |
| GNAS | - | -1 | 1842 | |
| SMAD1 | - | - | 1872 | |
| OTX2 | - | -1 | 1916 | |
| DUSP5 | - | - | 2022 | |
| DVL3 | - | - | 2090 | |
| PRRX1 | - | - | 2125 | |
| ID2 | - | - | 2154 | |
| HOXB8 | - | - | 2234 | |
| TENM4 | - | - | 2243 | |
| MSX2 | - | -1 | 2260 | |
| FGFR1 | - | - | 2262 | |
| HOXB5 | - | - | 2288 | |
| EPB41L5 | - | - | 2335 | |
| DLX2 | 0.25 | 1 | 2357 | |
| GATA3 | - | - | 2376 | |
| PRKAR1A | - | -1 | 2428 | |
| MYO15A | - | -1 | 2469 | |
| INSIG1 | - | - | 2529 | |
| COBL | 0.25 | 1 | 2536 | |
| LHX1 | - | - | 2560 | |
| DSCAML1 | - | - | 2579 | |
| TSHZ1 | - | - | 2619 | |
| NKX3-2 | - | - | 2620 | |
| FOXA2 | - | - | 2645 | |
| SMAD2 | - | - | 2694 | |
| SOD1 | - | -1 | 2702 | |
| DLX5 | - | - | 2706 | |
| COL11A1 | 0.25 | 1 | 2725 | |
| SHOX2 | - | - | 2767 | |
| TULP3 | - | - | 2770 | |
| MAB21L2 | - | - | 2779 | |
| TBX5 | - | - | 2836 | |
| SRF | - | - | 2841 | |
| HOXD9 | - | - | 2856 | |
| NOTCH1 | - | -1 | 2865 | |
| SKI | - | - | 2904 | |
| TFAP2A | - | -1 | 2923 | |
| TBX3 | - | - | 2958 | |
| GRB2 | - | - | 2962 | |
| C2CD3 | - | - | 2994 | |
| DEAF1 | 1.0 | 1 | 3084 | |
| MSX1 | - | -1 | 3127 | |
| DLX6 | 0.25 | 1 | 3129 | |
| NODAL | - | -1 | 3149 | |
| FZD3 | - | - | 3193 | |
| TGIF1 | - | -1 | 3264 | |
| OPA1 | - | - | 3271 | |
| T | - | - | 3286 | |
| BMI1 | - | - | 3300 | |
| WNT5A | - | - | 3319 | |
| RSPO3 | - | - | 3347 | |
| WNT8B | - | - | 3407 | |
| HOXA7 | - | - | 3411 | |
| RBP4 | - | - | 3448 | |
| CDON | - | - | 3487 | |
| FOXF1 | - | -1 | 3518 | |
| VAX2 | - | - | 3553 | |
| HAND1 | - | - | 3590 | |
| KLF4 | - | - | 3609 | |
| ITGA8 | - | - | 3626 | |
| FOXE3 | - | -1 | 3688 | |
| SP8 | - | - | 3706 | |
| SIX4 | - | - | 3738 | |
| OTOP1 | - | - | 3757 | |
| ALDH1A2 | - | - | 3771 | |
| DUSP1 | - | - | 3785 | |
| HOXB3 | - | - | 3793 | |
| DLG1 | - | - | 3822 | |
| FOXE1 | - | -1 | 3900 | |
| IRX2 | - | - | 3967 | |
| DUSP4 | - | - | 4019 | |
| SOX17 | - | - | 4024 | |
| HOXA13 | - | - | 4036 | |
| NANOG | - | - | 4083 | |
| WNT16 | - | - | 4117 | |
| SP1 | - | - | 4195 | |
| PBX2 | - | - | 4205 | |
| HOXA2 | - | - | 4273 | |
| ALX3 | - | - | 4288 | |
| WNT1 | - | - | 4383 | |
| AXIN1 | - | -1 | 4419 | |
| HOXA11 | - | - | 4432 | |
| GBX2 | - | - | 4440 | |
| ESRRB | 0.25 | 1 | 4453 | |
| FGF10 | - | -1 | 4532 | |
| HOXD10 | - | - | 4534 | |
| ALX1 | - | - | 4544 | |
| OTX1 | - | - | 4602 | |
| SOX8 | - | - | 4609 | |
| WNT3 | - | - | 4613 | |
| RSPO2 | - | - | 4631 | |
| NEUROG1 | 0.25 | 1 | 4644 | |
| FGF3 | - | - | 4687 | |
| WNT3A | - | - | 4747 | |
| RGMA | - | - | 4758 | |
| EXT1 | 0.25 | 1 | 4780 | |
| COL2A1 | - | -1 | 4839 | |
| GDF5 | - | -1 | 4882 | |
| MEN1 | - | -1 | 4917 | |
| TH | 0.25 | 1 | 4933 | |
| FGF4 | - | - | 4938 | |
| MECOM | - | - | 4979 | |
| HOXD13 | 0.25 | 1 | 4997 | |
| EN1 | - | - | 5021 | |
| HOXD11 | 0.25 | 1 | 5105 | |
| WNT6 | - | - | 5106 | |
| NDST1 | - | - | 5114 | |
| HOXA5 | - | - | 5132 | |
| TBX15 | - | - | 5222 | |
| SFRP2 | - | - | 5252 | |
| CLIC5 | - | - | 5291 | |
| NOG | - | -1 | 5439 | |
| TMIE | - | -1 | 5505 | |
| HOXC4 | - | - | 5536 | |
| HAND2 | - | - | 5589 | |
| ZNF358 | - | - | 5591 | |
| TCF21 | - | - | 5633 | |
| OSR1 | - | - | 5691 | |
| TBX1 | 0.25 | 1 | 5772 | |
| HES1 | 0.25 | 1 | 5912 | |
| ALX4 | - | - | 5932 | |
| NF2 | - | -1 | 5991 | |
| TLX2 | - | - | 6047 | |
| ACVR1 | - | -1 | 6054 | |
| SOX7 | - | - | 6117 | |
| CELSR1 | - | - | 6180 | |
| EYA2 | - | - | 6194 | |
| GLI3 | - | -1 | 6261 | |
| SIX2 | - | - | 6306 | |
| HIRA | - | - | 6325 | |
| IFT122 | - | -1 | 6355 | |
| ZEB2 | - | - | 6361 | |
| HMX2 | - | - | 6428 | |
| HMX3 | - | - | 6472 | |
| BMP4 | - | -1 | 6499 | |
| FOXI1 | - | -1 | 6510 | |
| DVL2 | - | - | 6546 | |
| PAX8 | - | -1 | 6637 | |
| GDF7 | - | - | 6682 | |
| IPMK | - | - | 6705 | |
| GAS1 | - | - | 6937 | |
| CER1 | - | - | 6956 | |
| TWIST1 | - | -1 | 6980 | |
| HTR2B | - | - | 6992 | |
| HOXA6 | - | - | 7036 | |
| WNT7B | - | - | 7113 | |
| RNF2 | - | - | 7154 | |
| IHH | - | -1 | 7160 | |
| LAMA5 | - | - | 7171 | |
| FRS2 | - | - | 7173 | |
| TINAG | - | - | 7232 | |
| POU4F3 | - | -1 | 7242 | |
| TGFBR1 | - | -1 | 7268 | |
| GLI2 | - | -1 | 7307 | |
| WNT7A | - | - | 7312 | |
| GJB6 | - | -1 | 7314 | |
| GRHL3 | - | - | 7409 | |
| HES3 | - | - | 7466 | |
| IRX3 | - | - | 7476 | |
| CFC1 | - | -1 | 7488 | |
| FOXL2 | - | -1 | 7521 | |
| FOXJ1 | - | - | 7628 | |
| MMP13 | - | -1 | 7779 | |
| GRSF1 | - | - | 7797 | |
| WNT8A | - | - | 7814 | |
| MYF5 | - | - | 7875 | |
| VASP | - | - | 7880 | |
| PDX1 | - | -1 | 7958 | |
| MYO7A | - | -1 | 8064 | |
| SUPT20H | - | - | 8074 | |
| FRZB | - | - | 8105 | |
| TBX4 | - | - | 8189 | |
| WNT9B | - | - | 8217 | |
| KDM2B | - | - | 8359 | |
| GCM1 | - | - | 8388 | |
| GPC3 | - | -1 | 8430 | |
| NKX2-5 | 0.25 | 1 | 8486 | |
| FGF8 | - | -1 | 8543 | |
| RARG | 0.25 | 1 | 8575 | |
| DUSP2 | - | - | 8596 | |
| TBX20 | - | -1 | 8764 | |
| TCF7 | - | - | 8813 | |
| CHST11 | - | - | 9003 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| LBX1 | - | - | 9134 | |
| GJA5 | - | - | 9156 | |
| SNAI1 | - | - | 9198 | |
| RDH10 | - | - | 9300 | |
| TSC2 | 0.25 | 1 | 9351 | |
| SUFU | - | -1 | 9372 | |
| LRP5 | - | -1 | 9420 | |
| ESX1 | - | - | 9451 | |
| EDN1 | - | - | 9540 | |
| PRKACA | - | - | 9630 | |
| FOXI2 | - | - | 9637 | |
| ACD | - | - | 9679 | |
| FOXP4 | - | - | 9688 | |
| GSC | - | - | 9702 | |
| PRKRA | - | - | 9728 | |
| TDGF1P3 | - | - | 9765 | |
| MIXL1 | - | - | 9839 | |
| HNF1B | - | -1 | 9881 | |
| SALL4 | - | - | 9929 | |
| CHRNA10 | - | - | 10096 | |
| BBS4 | - | -1 | 10131 | |
| USH1G | - | -1 | 10139 | |
| FOXC2 | - | - | 10175 | |
| DLD | - | -1 | 10207 | |
| INSIG2 | - | - | 10252 | |
| TGFBR2 | - | -1 | 10407 | |
| SMO | 0.25 | 1 | 10504 | |
| CRYAA | - | - | 10509 | |
| ATP6V1B1 | - | - | 10564 | |
| HOXB4 | - | - | 10579 | |
| PPAP2B | - | - | 10628 | |
| STRA6 | - | -1 | 10685 | |
| LDB1 | - | - | 10693 | |
| MAFB | - | - | 10783 | |
| GDF3 | - | -1 | 10819 | |
| BBS5 | - | -1 | 10945 | |
| FOXH1 | - | - | 10963 | |
| CEP290 | - | -1 | 11184 | |
| MUSTN1 | - | - | 11301 | |
| ATOH1 | - | - | 11336 | |
| HS2ST1 | - | - | 11391 | |
| LMBR1 | - | -1 | 11626 | |
| NAT8B | - | - | 12318 | |
| SIX1 | - | -1 | 12393 | |
| PTPRQ | - | -1 | 12427 | |
| GATA4 | - | -1 | 12466 | |
| IFT88 | - | - | 12504 | |
| HOXB7 | - | - | 12742 | |
| HDAC1 | - | - | 12825 | |
| KCNQ4 | - | -1 | 12849 | |
| VEGFC | - | - | 12850 | |
| NAT8 | - | - | 12874 | |
| EOMES | - | - | 12952 | |
| FUZ | - | - | 12978 | |
| TGFB3 | - | -1 | 13097 | |
| FGF2 | - | - | 13150 | |
| WNT9A | - | - | 13365 | |
| MDFI | - | - | 13519 | |
| PRKRAP1 | - | - | 13599 | |
| SP9 | - | - | 13625 | |
| PTK7 | - | - | 13643 | |
| FOXC1 | - | -1 | 13793 | |
| MESP1 | - | - | 13805 | |
| GJA1 | 0.25 | 1 | 13867 | |
| NSD1 | 0.25 | 1 | 14116 | |
| GNA12 | - | - | 14481 | |
| MKKS | - | -1 | 14510 | |
| TWIST2 | - | - | 15321 | |
| WNT5B | - | - | 15534 | |
| WLS | - | - | 15707 | |
| FOXI3 | - | - | 15933 | |
| IFT52 | - | - | 16599 | |
| FZD2 | - | - | 16930 | |
| INHBA | - | - | 16974 | |
| FBXW4 | - | - | 18142 | |
| PSEN1 | - | - | 18523 | |
| SHH | - | -1 | 18571 | |
| DVL1P1 | - | - | 18731 | |
| DVL1 | - | - | 18924 | |
| TEAD2 | - | - | 19466 | |
| EPHA2 | - | -1 | 19467 | |
| CFC1B | - | - | 19685 | |
| POU5F1 | - | - | 19704 | |
| FZD6 | - | - | 19921 | |
| ARFRP1 | - | - | 20033 | |
| FOXS1 | - | - | 20143 | |
| JUP | - | -1 | 20291 | |
| ECE1 | - | -1 | 20540 | |
| HESX1 | - | - | 20692 | |
| TXNRD1 | - | - | 20757 | |
| SOX18 | - | - | 20812 | |
| RAB23 | - | - | 20831 | |
| OSR2 | - | - | 20931 | |
| KIAA1715 | - | - | 21073 | |
| ADM | - | - | 21106 | |
| KAT2A | - | - | 21262 | |
| RPGRIP1L | - | - | 21472 | |
| EFNA1 | - | - | 21477 | |
| UGDH | - | - | 21580 | |
| TRIM15 | - | - | 21614 | |
| PITX1 | 0.25 | 1 | 21646 | |
| ALDH1A3 | - | - | 21739 | |
| WNT4 | - | - | 21809 | |
| BBS7 | - | -1 | 22032 | |
| TCAP | - | -1 | 22131 | |
| BCL10 | - | -1 | 22368 | |
| GJB5 | - | - | 22420 | |
| TP63 | - | -1 | 22528 | |
| CYR61 | - | - | 22574 | |
| ECSIT | - | - | 22627 | |
| IFT172 | - | - | 22658 | |
| SOCS3 | - | - | 22661 | |
| SETDB2 | 0.25 | 1 | 22691 | |
| MESP2 | - | -1 | 22723 | |
| CRABP2 | - | - | 22763 | |
| KIF16B | - | - | 22922 | |
| PSEN2 | - | - | 23095 | |
| TGFB1I1 | - | - | 23709 | |
| PRRX2 | - | - | 23936 | |
| SPINT1 | - | - | 23992 | |
| FLVCR1 | - | - | 24042 | |
| IMPAD1 | - | - | 24504 | |
| CASP8 | - | -1 | 24587 | |
| ENG | - | -1 | 24746 | |
| LIAS | - | - | 24813 | |
| TWSG1 | - | - | 24840 | |
| EXT2 | - | -1 | 25243 | |
| NAGLU | - | -1 | 25261 |
GO:0048598
| Name | Description | External IDs |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | Entrez:491  HGNC: 815  Ensembl: ENSG00000157087  HPRD: 00160  |
| NIPBL | Nipped-B homolog (Drosophila) | Entrez:25836  HPRD: 10560  HGNC: 28862  Ensembl: ENSG00000164190  |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| NEUROD1 | neuronal differentiation 1 | Entrez:4760  HPRD: 03428  HGNC: 7762  Ensembl: ENSG00000162992  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | ||||
| NIPBL | Nipped-B homolog (Drosophila) | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| NEUROD1 | neuronal differentiation 1 | ||||
| SATB2 | SATB homeobox 2 |
| Query gene | Gene | Gene description | Edge score |
| ATP2B2 | ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | |
| NIPBL | NIPBL | Nipped-B homolog (Drosophila) | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| NEUROD1 | NEUROD1 | neuronal differentiation 1 | |
| SATB2 | SATB2 | SATB homeobox 2 |