| Gene | Input weight | Standard | Rank | |
| APC | 0.25 | 1 | 266 | |
| LRP6 | - | - | 279 | |
| SFRP1 | - | - | 387 | |
| PAX6 | 0.25 | 1 | 544 | |
| LHX2 | - | - | 655 | |
| FOXG1 | - | - | 661 | |
| CHRD | - | - | 941 | |
| PTCH1 | - | -1 | 972 | |
| NKX2-2 | - | - | 1120 | |
| BMPR1A | - | - | 1140 | |
| CXXC4 | - | - | 1490 | |
| LRP4 | - | - | 1500 | |
| WNT2B | - | - | 1673 | |
| WNT2 | 0.25 | 1 | 2299 | |
| SMAD6 | - | - | 2305 | |
| BMPR1B | - | -1 | 2316 | |
| DUSP6 | - | - | 2466 | |
| LHX1 | - | - | 2560 | |
| DSCAML1 | - | - | 2579 | |
| FOXA2 | - | - | 2645 | |
| SMAD2 | - | - | 2694 | |
| TULP3 | - | - | 2770 | |
| HHIP | - | - | 2786 | |
| TGIF1 | - | -1 | 3264 | |
| WNT5A | - | - | 3319 | |
| WNT8B | - | - | 3407 | |
| VAX2 | - | - | 3553 | |
| PAX7 | - | -1 | 3577 | |
| SP8 | - | - | 3706 | |
| NKX2-1 | - | - | 4142 | |
| AXIN2 | - | -1 | 4260 | |
| HOXA2 | - | - | 4273 | |
| AXIN1 | - | -1 | 4419 | |
| HOXA11 | - | - | 4432 | |
| LMX1B | 0.5 | 1 | 4551 | |
| WNT3 | - | - | 4613 | |
| NKX6-1 | - | - | 4665 | |
| WNT3A | - | - | 4747 | |
| NKX6-2 | - | - | 4791 | |
| EN1 | - | - | 5021 | |
| HOXD11 | 0.25 | 1 | 5105 | |
| NOG | - | -1 | 5439 | |
| MNX1 | - | - | 5812 | |
| GLI3 | - | -1 | 6261 | |
| BMP4 | - | -1 | 6499 | |
| GAS1 | - | - | 6937 | |
| GLI2 | - | -1 | 7307 | |
| WNT7A | - | - | 7312 | |
| WNT8A | - | - | 7814 | |
| GSX2 | - | - | 8581 | |
| TBX20 | - | -1 | 8764 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| SUFU | - | -1 | 9372 | |
| LRP5 | - | -1 | 9420 | |
| EDN1 | - | - | 9540 | |
| GSC | - | - | 9702 | |
| SMO | 0.25 | 1 | 10504 | |
| FBXL15 | - | - | 12126 | |
| IFT88 | - | - | 12504 | |
| MDFI | - | - | 13519 | |
| NOTO | - | - | 14785 | |
| EVX1 | - | - | 15344 | |
| WNT5B | - | - | 15534 | |
| IFT52 | - | - | 16599 | |
| PSEN1 | - | - | 18523 | |
| SHH | - | -1 | 18571 | |
| HOXB2 | - | - | 20538 | |
| RAB23 | - | - | 20831 | |
| SENP2 | - | - | 21704 | |
| LRP5L | - | - | 22282 | |
| IFT172 | - | - | 22658 | |
| DISP1 | - | - | 22983 | |
| PSEN2 | - | - | 23095 | |
| FZD5 | - | - | 23249 | |
| AIDA | - | - | 25211 |
GO:0009953
| Name | Description | External IDs |
| APC | adenomatous polyposis coli | Entrez:324 HGNC: 583 HPRD: 01439 Ensembl: ENSG00000134982 |
| LRP6 | low density lipoprotein receptor-related protein 6 | Entrez:4040 Ensembl: ENSG00000070018 HGNC: 6698 HPRD: 04617 |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422 HPRD: 09165 Ensembl: ENSG00000104332 HGNC: 10776 |
| PAX6 | paired box 6 | Entrez:5080 HPRD: 06167 Ensembl: ENSG00000007372 HGNC: 8620 |
| LHX2 | LIM homeobox 2 | Entrez:9355 HPRD: 04786 HGNC: 6594 Ensembl: ENSG00000106689 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| APC | adenomatous polyposis coli | ||||
| LRP6 | low density lipoprotein receptor-related protein 6 | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| PAX6 | paired box 6 | ||||
| LHX2 | LIM homeobox 2 |
| Query gene | Gene | Gene description | Edge score |
| APC | APC | adenomatous polyposis coli | |
| LRP6 | LRP6 | low density lipoprotein receptor-related protein 6 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| PAX6 | PAX6 | paired box 6 | |
| LHX2 | LHX2 | LIM homeobox 2 |