| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 200 | |
| SOX4 | - | - | 250 | |
| APC | 0.25 | 1 | 266 | |
| SFRP1 | - | - | 387 | |
| ZCCHC11 | - | - | 737 | |
| DICER1 | - | -1 | 762 | |
| SOX9 | - | -1 | 970 | |
| NR2E1 | 0.25 | 1 | 977 | |
| BMPR1A | - | - | 1140 | |
| ZHX2 | - | - | 1216 | |
| LDB2 | - | - | 1347 | |
| FZD7 | - | - | 1357 | |
| VANGL2 | - | - | 1793 | |
| FGFR1 | - | - | 2262 | |
| FGFR3 | - | -1 | 2640 | |
| IGF1 | 0.25 | 1 | 2793 | |
| SKI | - | - | 2904 | |
| NODAL | - | -1 | 3149 | |
| KLF10 | - | - | 3457 | |
| KLF4 | - | - | 3609 | |
| CDX2 | - | - | 4071 | |
| NANOG | - | - | 4083 | |
| TET1 | - | - | 4338 | |
| ESRRB | 0.25 | 1 | 4453 | |
| FGF10 | - | -1 | 4532 | |
| PIWIL2 | - | - | 4828 | |
| FGF4 | - | - | 4938 | |
| NOG | - | -1 | 5439 | |
| ZNF358 | - | - | 5591 | |
| HES1 | 0.25 | 1 | 5912 | |
| NOTCH2 | - | -1 | 6664 | |
| LIN28A | - | - | 7070 | |
| LIG4 | - | -1 | 7187 | |
| WNT7A | - | - | 7312 | |
| ASCL2 | - | - | 10237 | |
| NANOS2 | - | - | 10402 | |
| LDB1 | - | - | 10693 | |
| VPS72 | - | - | 10808 | |
| RIF1 | - | - | 11422 | |
| TCF7L1 | - | - | 12273 | |
| FGF2 | - | - | 13150 | |
| SHH | - | -1 | 18571 | |
| POU5F1 | - | - | 19704 | |
| TCL1A | - | - | 21526 | |
| LIF | - | - | 22134 | |
| YAP1 | - | - | 22469 | |
| TPT1 | - | - | 25343 |
GO:0048864
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| SOX4 | SRY (sex determining region Y)-box 4 | Entrez:6659  HPRD: 01695  HGNC: 11200  Ensembl: ENSG00000124766  |
| APC | adenomatous polyposis coli | Entrez:324  HGNC: 583  HPRD: 01439  Ensembl: ENSG00000134982  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| ZCCHC11 | zinc finger, CCHC domain containing 11 | Entrez:23318  HGNC: 28981  Ensembl: ENSG00000134744  HPRD: 15700  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| SOX4 | SRY (sex determining region Y)-box 4 | ||||
| APC | adenomatous polyposis coli | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| ZCCHC11 | zinc finger, CCHC domain containing 11 |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| SOX4 | SOX4 | SRY (sex determining region Y)-box 4 | |
| APC | APC | adenomatous polyposis coli | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| ZCCHC11 | ZCCHC11 | zinc finger, CCHC domain containing 11 |