| Gene | Input weight | Standard | Rank | |
| NIPBL | - | -1 | 7 | |
| SOX11 | - | - | 96 | |
| FGFR2 | - | -1 | 237 | |
| FGF9 | - | - | 262 | |
| RARB | 0.25 | 1 | 300 | |
| EP300 | - | -1 | 318 | |
| ASCL1 | - | - | 413 | |
| SALL1 | - | - | 506 | |
| RET | - | -1 | 524 | |
| DICER1 | - | -1 | 762 | |
| SMAD3 | - | - | 823 | |
| TGFB2 | - | - | 834 | |
| NKX2-2 | - | - | 1120 | |
| SOX10 | - | -1 | 1520 | |
| ACVR2B | - | -1 | 1676 | |
| FOXF2 | - | - | 1787 | |
| EDNRB | - | -1 | 2042 | |
| ID2 | - | - | 2154 | |
| EPB41L5 | - | - | 2335 | |
| EGFR | - | -1 | 2546 | |
| NKX3-2 | - | - | 2620 | |
| FGFR3 | - | -1 | 2640 | |
| SMAD2 | - | - | 2694 | |
| SHOX2 | - | - | 2767 | |
| NOTCH1 | - | -1 | 2865 | |
| NR1H4 | - | - | 3080 | |
| NODAL | - | -1 | 3149 | |
| WNT5A | - | - | 3319 | |
| FOXF1 | - | -1 | 3518 | |
| ALDH1A2 | - | - | 3771 | |
| FOXE1 | - | -1 | 3900 | |
| SOX17 | - | - | 4024 | |
| HOXA13 | - | - | 4036 | |
| OTC | - | -1 | 4449 | |
| FGF10 | - | -1 | 4532 | |
| HOXD13 | 0.25 | 1 | 4997 | |
| CYP1A1 | 0.25 | 1 | 5067 | |
| HOXA5 | - | - | 5132 | |
| TCF21 | - | - | 5633 | |
| ALX4 | - | - | 5932 | |
| GLI3 | - | -1 | 6261 | |
| FOXL1 | - | - | 6313 | |
| OXTR | 0.5 | 1 | 6388 | |
| BMP4 | - | -1 | 6499 | |
| NKX2-3 | - | - | 6924 | |
| IHH | - | -1 | 7160 | |
| TINAG | - | - | 7232 | |
| TGFBR1 | - | -1 | 7268 | |
| GLI2 | - | -1 | 7307 | |
| WNT11 | - | - | 7820 | |
| ARG2 | - | - | 8780 | |
| TCF7 | - | - | 8813 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| GATA5 | - | - | 9103 | |
| FOXP4 | - | - | 9688 | |
| MIXL1 | - | - | 9839 | |
| PKDCC | - | - | 9871 | |
| HNF1B | - | -1 | 9881 | |
| SMO | 0.25 | 1 | 10504 | |
| STRA6 | - | -1 | 10685 | |
| GATA6 | - | -1 | 10828 | |
| NKX2-6 | - | -1 | 11887 | |
| HMGCS2 | - | - | 12061 | |
| RXRA | 0.25 | 1 | 12299 | |
| GATA4 | - | -1 | 12466 | |
| CPS1 | - | -1 | 12820 | |
| PCSK5 | - | - | 13062 | |
| TGFB3 | - | -1 | 13097 | |
| TNF | 0.25 | 1 | 15243 | |
| IL8 | - | - | 15864 | |
| SHH | - | -1 | 18571 | |
| TP73 | - | - | 18810 | |
| STX2 | - | - | 19379 | |
| TGFB1 | 0.25 | 1 | 20135 | |
| SAV1 | - | - | 21620 | |
| BBS7 | - | -1 | 22032 | |
| TP63 | - | -1 | 22528 | |
| IL18 | - | - | 24018 | |
| SPDEF | - | - | 24165 | |
| ASS1 | - | -1 | 24321 | |
| ADA | 0.5 | 1 | 24751 | |
| RARRES2 | - | - | 25092 | |
| CCNB1 | - | - | 25174 | |
| TYMS | - | - | 25226 |
GO:0048565
| Name | Description | External IDs |
| NIPBL | Nipped-B homolog (Drosophila) | Entrez:25836 HPRD: 10560 HGNC: 28862 Ensembl: ENSG00000164190 |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664 HGNC: 11191 Ensembl: ENSG00000176887 HPRD: 02940 |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263 HPRD: 01492 Ensembl: ENSG00000066468 HGNC: 3689 |
| FGF9 | fibroblast growth factor 9 | Entrez:2254 HPRD: 02951 HGNC: 3687 Ensembl: ENSG00000102678 |
| RARB | retinoic acid receptor, beta | Entrez:5915 HPRD: 07183 Ensembl: ENSG00000077092 HGNC: 9865 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NIPBL | Nipped-B homolog (Drosophila) | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| FGF9 | fibroblast growth factor 9 | ||||
| RARB | retinoic acid receptor, beta |
| Query gene | Gene | Gene description | Edge score |
| NIPBL | NIPBL | Nipped-B homolog (Drosophila) | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| FGF9 | FGF9 | fibroblast growth factor 9 | |
| RARB | RARB | retinoic acid receptor, beta |