| Gene | Input weight | Standard | Rank | |
| NTRK3 | 0.25 | 1 | 6 | |
| PPP2CA | - | - | 20 | |
| BCL11A | 1.0 | 1 | 32 | |
| SLIT1 | - | - | 61 | |
| TTC3 | - | - | 68 | |
| NRCAM | 0.25 | 1 | 69 | |
| ADNP | 1.0 | 1 | 71 | |
| PAFAH1B1 | 0.25 | 1 | 74 | |
| MAPT | 0.25 | 1 | 76 | |
| ARHGDIA | - | - | 109 | |
| CDH2 | - | - | 164 | |
| CACNA1A | - | -1 | 270 | |
| GRIN1 | - | - | 294 | |
| SEMA4F | - | - | 303 | |
| EP300 | - | -1 | 318 | |
| RAP2A | - | - | 324 | |
| DSCAM | 1.0 | 1 | 330 | |
| SFRP1 | - | - | 387 | |
| MAP1B | - | - | 403 | |
| PAX2 | - | - | 653 | |
| SLIT2 | - | - | 659 | |
| CNTN2 | - | - | 674 | |
| SIPA1L1 | - | - | 716 | |
| POU3F2 | - | - | 750 | |
| ACTR3 | - | - | 803 | |
| OMG | 0.25 | 1 | 808 | |
| CDH4 | - | - | 812 | |
| SMAD4 | - | - | 821 | |
| SMAD3 | - | - | 823 | |
| TGFB2 | - | - | 834 | |
| RUFY3 | - | - | 906 | |
| NR2E1 | 0.25 | 1 | 977 | |
| ULK1 | - | - | 1008 | |
| NDEL1 | 0.25 | 1 | 1074 | |
| SMAD7 | - | - | 1192 | |
| ROBO2 | - | -1 | 1202 | |
| CHRNA3 | - | - | 1266 | |
| LEF1 | - | - | 1499 | |
| TNIK | - | - | 1531 | |
| THY1 | - | - | 1580 | |
| DCC | - | - | 1687 | |
| LZTS1 | - | -1 | 1709 | |
| SRCIN1 | - | - | 1738 | |
| AKAP5 | - | - | 1759 | |
| LRRC4C | - | - | 1827 | |
| SMAD1 | - | - | 1872 | |
| YWHAH | - | - | 2009 | |
| ACHE | - | - | 2025 | |
| XYLT1 | - | -1 | 2057 | |
| MBP | - | - | 2120 | |
| SSH2 | - | - | 2172 | |
| ROBO1 | - | - | 2182 | |
| RNF6 | - | -1 | 2235 | |
| MARK2 | - | - | 2280 | |
| RHOA | - | - | 2292 | |
| CIT | - | - | 2320 | |
| EPB41L5 | - | - | 2335 | |
| STK25 | - | - | 2375 | |
| CAPRIN1 | - | - | 2429 | |
| PTK2 | 0.25 | 1 | 2488 | |
| SMAD2 | - | - | 2694 | |
| BCL9L | - | - | 2729 | |
| RTN4 | - | - | 2735 | |
| SHOX2 | - | - | 2767 | |
| NRP1 | - | - | 2807 | |
| TBX5 | - | - | 2836 | |
| PLXNB1 | - | - | 2853 | |
| NOTCH1 | - | -1 | 2865 | |
| SKIL | - | - | 2889 | |
| CITED1 | - | - | 3064 | |
| KNDC1 | - | - | 3146 | |
| WNT5A | - | - | 3319 | |
| DAB2IP | - | - | 3482 | |
| SEMA3A | - | - | 3494 | |
| TCF7L2 | 0.5 | 1 | 3548 | |
| CDKL5 | - | -1 | 3600 | |
| NUMBL | - | - | 3618 | |
| DIXDC1 | - | - | 3734 | |
| GREM1 | - | - | 3867 | |
| TNR | - | - | 3868 | |
| SSH1 | - | - | 4066 | |
| NKX2-1 | - | - | 4142 | |
| AXIN2 | - | -1 | 4260 | |
| LIMK1 | - | - | 4265 | |
| CAPRIN2 | - | - | 4284 | |
| BARHL2 | - | - | 4545 | |
| WNT3 | - | - | 4613 | |
| GDNF | - | -1 | 4658 | |
| WNT3A | - | - | 4747 | |
| ANAPC2 | - | - | 5008 | |
| ZNF703 | - | - | 5031 | |
| PTPRF | - | - | 5040 | |
| SFRP2 | - | - | 5252 | |
| RYK | - | - | 5383 | |
| PLXNA4 | - | - | 5391 | |
| MAG | - | - | 5765 | |
| STK11 | - | -1 | 6000 | |
| NTN1 | - | - | 6023 | |
| TLX2 | - | - | 6047 | |
| NGFR | 0.25 | 1 | 6212 | |
| NGF | 0.25 | 1 | 6229 | |
| RTN4R | - | - | 6304 | |
| LINGO1 | - | - | 6321 | |
| PAX8 | - | -1 | 6637 | |
| TGFBR3 | - | - | 6672 | |
| TWIST1 | - | -1 | 6980 | |
| ISLR2 | - | - | 7030 | |
| ILK | - | - | 7305 | |
| WNT7A | - | - | 7312 | |
| CXCL12 | - | - | 7802 | |
| NUMB | - | - | 7848 | |
| MET | 1.0 | 1 | 8002 | |
| WNT9B | - | - | 8217 | |
| BAMBI | - | - | 8550 | |
| LRRK2 | - | -1 | 8802 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| SNAI1 | - | - | 9198 | |
| SCARF1 | - | - | 9851 | |
| PDLIM5 | - | - | 11350 | |
| PLXNB2 | - | - | 12091 | |
| SPP1 | - | - | 12442 | |
| SEMA4D | - | - | 12699 | |
| IFNG | - | -1 | 12827 | |
| TGFB3 | - | -1 | 13097 | |
| SEMA7A | - | - | 13700 | |
| NEDD4 | 0.25 | 1 | 14040 | |
| KIF13B | - | - | 14390 | |
| PSEN1 | - | - | 18523 | |
| METRN | - | - | 19614 | |
| TGFB1 | 0.25 | 1 | 20135 | |
| CHRNB2 | 0.25 | 1 | 20216 | |
| AMIGO1 | - | - | 20613 | |
| TTL | - | - | 20764 | |
| ARHGEF1 | - | - | 21297 | |
| EFNA1 | - | - | 21477 | |
| LIF | - | - | 22134 | |
| KLK8 | - | - | 22593 | |
| TNFRSF12A | - | - | 22985 | |
| TWF2 | - | - | 23010 | |
| APOE | 0.25 | 1 | 23516 | |
| TGFB1I1 | - | - | 23709 | |
| SSH3 | - | - | 23947 | |
| TRPV2 | - | - | 24139 | |
| COL1A1 | - | -1 | 24140 | |
| WWTR1 | - | - | 24317 | |
| FXN | - | -1 | 25604 |
GO:0010769
| Name | Description | External IDs |
| NTRK3 | neurotrophic tyrosine kinase, receptor, type 3 | Entrez:4916  Ensembl: ENSG00000140538  HPRD: 01870  HGNC: 8033  |
| PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | Entrez:5515  HGNC: 9299  HPRD: 08912  |
| BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) | Entrez:53335  Ensembl: ENSG00000119866  HGNC: 13221  HPRD: 05949  |
| SLIT1 | slit homolog 1 (Drosophila) | Entrez:6585  Ensembl: ENSG00000187122  HGNC: 11085  HPRD: 04773  |
| TTC3 | tetratricopeptide repeat domain 3 | Entrez:7267  HPRD: 03773  HGNC: 12393  Ensembl: ENSG00000182670  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NTRK3 | neurotrophic tyrosine kinase, receptor, type 3 | ||||
| PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | ||||
| BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) | ||||
| SLIT1 | slit homolog 1 (Drosophila) | ||||
| TTC3 | tetratricopeptide repeat domain 3 |
| Query gene | Gene | Gene description | Edge score |
| NTRK3 | NTRK3 | neurotrophic tyrosine kinase, receptor, type 3 | |
| PPP2CA | PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | |
| BCL11A | BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) | |
| SLIT1 | SLIT1 | slit homolog 1 (Drosophila) | |
| TTC3 | TTC3 | tetratricopeptide repeat domain 3 |