| Gene | Input weight | Standard | Rank | |
| SOX11 | - | - | 96 | |
| PLXNA2 | - | - | 243 | |
| SOX4 | - | - | 250 | |
| LRP6 | - | - | 279 | |
| NF1 | 0.25 | 1 | 372 | |
| SFRP1 | - | - | 387 | |
| SALL1 | - | - | 506 | |
| PAX6 | 0.25 | 1 | 544 | |
| PFN1 | - | - | 548 | |
| PAX2 | - | - | 653 | |
| LHX2 | - | - | 655 | |
| TSC1 | 0.25 | 1 | 790 | |
| CHRD | - | - | 941 | |
| PTCH1 | - | -1 | 972 | |
| PROX1 | - | - | 997 | |
| MIB1 | 0.25 | 1 | 1153 | |
| LMO4 | - | - | 1244 | |
| MAP3K7 | - | - | 1275 | |
| DLC1 | - | - | 1282 | |
| ENAH | - | - | 1348 | |
| WNT10B | - | - | 1517 | |
| ZIC2 | - | -1 | 1609 | |
| VANGL2 | - | - | 1793 | |
| COBL | 0.25 | 1 | 2536 | |
| FOXA2 | - | - | 2645 | |
| TULP3 | - | - | 2770 | |
| NOTCH1 | - | -1 | 2865 | |
| SKI | - | - | 2904 | |
| TFAP2A | - | -1 | 2923 | |
| C2CD3 | - | - | 2994 | |
| DEAF1 | 1.0 | 1 | 3084 | |
| NODAL | - | -1 | 3149 | |
| FZD3 | - | - | 3193 | |
| TGIF1 | - | -1 | 3264 | |
| OPA1 | - | - | 3271 | |
| T | - | - | 3286 | |
| BMI1 | - | - | 3300 | |
| WNT5A | - | - | 3319 | |
| PAX7 | - | -1 | 3577 | |
| ALDH1A2 | - | - | 3771 | |
| WNT1 | - | - | 4383 | |
| GBX2 | - | - | 4440 | |
| ALX1 | - | - | 4544 | |
| WNT3 | - | - | 4613 | |
| WNT3A | - | - | 4747 | |
| RGMA | - | - | 4758 | |
| HES5 | - | - | 4919 | |
| EN1 | - | - | 5021 | |
| SFRP2 | - | - | 5252 | |
| FOXB1 | - | - | 5360 | |
| NOG | - | -1 | 5439 | |
| ZNF358 | - | - | 5591 | |
| MNX1 | - | - | 5812 | |
| HES1 | 0.25 | 1 | 5912 | |
| AMBRA1 | - | - | 5959 | |
| CELSR1 | - | - | 6180 | |
| GLI3 | - | -1 | 6261 | |
| IFT122 | - | -1 | 6355 | |
| ZEB2 | - | - | 6361 | |
| BMP4 | - | -1 | 6499 | |
| DVL2 | - | - | 6546 | |
| GDF7 | - | - | 6682 | |
| IPMK | - | - | 6705 | |
| GAS1 | - | - | 6937 | |
| TWIST1 | - | -1 | 6980 | |
| GLI2 | - | -1 | 7307 | |
| HES3 | - | - | 7466 | |
| VASP | - | - | 7880 | |
| KDM2B | - | - | 8359 | |
| TCF7 | - | - | 8813 | |
| TSC2 | 0.25 | 1 | 9351 | |
| SUFU | - | -1 | 9372 | |
| GSC | - | - | 9702 | |
| SALL4 | - | - | 9929 | |
| BBS4 | - | -1 | 10131 | |
| SMO | 0.25 | 1 | 10504 | |
| FOXH1 | - | - | 10963 | |
| FUZ | - | - | 12978 | |
| PTK7 | - | - | 13643 | |
| PHGDH | - | -1 | 14598 | |
| IFT52 | - | - | 16599 | |
| PSEN1 | - | - | 18523 | |
| SHH | - | -1 | 18571 | |
| DVL1 | - | - | 18924 | |
| TEAD2 | - | - | 19466 | |
| EPHA2 | - | -1 | 19467 | |
| FZD6 | - | - | 19921 | |
| ADM | - | - | 21106 | |
| KAT2A | - | - | 21262 | |
| RPGRIP1L | - | - | 21472 | |
| BCL10 | - | -1 | 22368 | |
| IFT172 | - | - | 22658 | |
| PSEN2 | - | - | 23095 | |
| CASP8 | - | -1 | 24587 | |
| LIAS | - | - | 24813 | |
| PLOD3 | - | - | 24938 |
GO:0021915
| Name | Description | External IDs |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664 HGNC: 11191 Ensembl: ENSG00000176887 HPRD: 02940 |
| PLXNA2 | plexin A2 | Entrez:5362 HPRD: 03033 Ensembl: ENSG00000076356 HGNC: 9100 |
| SOX4 | SRY (sex determining region Y)-box 4 | Entrez:6659 HPRD: 01695 HGNC: 11200 Ensembl: ENSG00000124766 |
| LRP6 | low density lipoprotein receptor-related protein 6 | Entrez:4040 Ensembl: ENSG00000070018 HGNC: 6698 HPRD: 04617 |
| NF1 | neurofibromin 1 | Entrez:4763 HGNC: 7765 HPRD: 01203 Ensembl: ENSG00000196712 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| PLXNA2 | plexin A2 | ||||
| SOX4 | SRY (sex determining region Y)-box 4 | ||||
| LRP6 | low density lipoprotein receptor-related protein 6 | ||||
| NF1 | neurofibromin 1 |
| Query gene | Gene | Gene description | Edge score |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| PLXNA2 | PLXNA2 | plexin A2 | |
| SOX4 | SOX4 | SRY (sex determining region Y)-box 4 | |
| LRP6 | LRP6 | low density lipoprotein receptor-related protein 6 | |
| NF1 | NF1 | neurofibromin 1 |