| Gene | Input weight | Standard | Rank | |
| NIPBL | - | -1 | 7 | |
| SOX11 | - | - | 96 | |
| SATB2 | 0.25 | 1 | 149 | |
| FGF9 | - | - | 262 | |
| PBX1 | - | - | 489 | |
| MYCN | - | - | 560 | |
| SP3 | - | - | 562 | |
| SMAD3 | - | - | 823 | |
| ACVR2A | - | - | 965 | |
| BMP7 | - | - | 1137 | |
| HOXD3 | - | - | 1195 | |
| PCGF2 | - | - | 1217 | |
| HOXD4 | - | - | 1445 | |
| GNAS | - | -1 | 1842 | |
| PRRX1 | - | - | 2125 | |
| HOXB8 | - | - | 2234 | |
| HOXB5 | - | - | 2288 | |
| HOXD1 | - | - | 2342 | |
| DLX2 | 0.25 | 1 | 2357 | |
| DLX1 | 0.25 | 1 | 2400 | |
| LHX1 | - | - | 2560 | |
| DSCAML1 | - | - | 2579 | |
| NKX3-2 | - | - | 2620 | |
| SMAD2 | - | - | 2694 | |
| COL11A1 | 0.25 | 1 | 2725 | |
| SHOX2 | - | - | 2767 | |
| TULP3 | - | - | 2770 | |
| HOXD9 | - | - | 2856 | |
| TFAP2A | - | -1 | 2923 | |
| DEAF1 | 1.0 | 1 | 3084 | |
| NODAL | - | -1 | 3149 | |
| BMI1 | - | - | 3300 | |
| WNT5A | - | - | 3319 | |
| HOXA7 | - | - | 3411 | |
| HOXA3 | - | - | 3427 | |
| RBP4 | - | - | 3448 | |
| KIAA1217 | - | - | 3570 | |
| PAX7 | - | -1 | 3577 | |
| SIX4 | - | - | 3738 | |
| HOXB3 | - | - | 3793 | |
| DLG1 | - | - | 3822 | |
| SP1 | - | - | 4195 | |
| HOXA2 | - | - | 4273 | |
| ALX3 | - | - | 4288 | |
| AXIN1 | - | -1 | 4419 | |
| HOXD10 | - | - | 4534 | |
| ALX1 | - | - | 4544 | |
| HOXB6 | - | - | 4560 | |
| COL2A1 | - | -1 | 4839 | |
| MEN1 | - | -1 | 4917 | |
| NDST1 | - | - | 5114 | |
| HOXA5 | - | - | 5132 | |
| TBX15 | - | - | 5222 | |
| NOG | - | -1 | 5439 | |
| OSR1 | - | - | 5691 | |
| TBX1 | 0.25 | 1 | 5772 | |
| ALX4 | - | - | 5932 | |
| GLI3 | - | -1 | 6261 | |
| SIX2 | - | - | 6306 | |
| BMP4 | - | -1 | 6499 | |
| GAS1 | - | - | 6937 | |
| TWIST1 | - | -1 | 6980 | |
| HOXA6 | - | - | 7036 | |
| IHH | - | -1 | 7160 | |
| TGFBR1 | - | -1 | 7268 | |
| TAPT1 | - | - | 7465 | |
| WNT11 | - | - | 7820 | |
| MYF5 | - | - | 7875 | |
| WNT9B | - | - | 8217 | |
| CHST11 | - | - | 9003 | |
| RDH10 | - | - | 9300 | |
| GSC | - | - | 9702 | |
| FOXC2 | - | - | 10175 | |
| TGFBR2 | - | -1 | 10407 | |
| SMO | 0.25 | 1 | 10504 | |
| HOXB4 | - | - | 10579 | |
| SIX1 | - | -1 | 12393 | |
| HOXB7 | - | - | 12742 | |
| FUZ | - | - | 12978 | |
| PCSK5 | - | - | 13062 | |
| TGFB3 | - | -1 | 13097 | |
| WNT9A | - | - | 13365 | |
| MDFI | - | - | 13519 | |
| TWIST2 | - | - | 15321 | |
| SHH | - | -1 | 18571 | |
| OSR2 | - | - | 20931 | |
| PRRX2 | - | - | 23936 | |
| COL1A1 | - | -1 | 24140 |
GO:0048706
| Name | Description | External IDs |
| NIPBL | Nipped-B homolog (Drosophila) | Entrez:25836 HPRD: 10560 HGNC: 28862 Ensembl: ENSG00000164190 |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664 HGNC: 11191 Ensembl: ENSG00000176887 HPRD: 02940 |
| SATB2 | SATB homeobox 2 | Entrez:23314 Ensembl: ENSG00000119042 HPRD: 12178 HGNC: 21637 |
| FGF9 | fibroblast growth factor 9 | Entrez:2254 HPRD: 02951 HGNC: 3687 Ensembl: ENSG00000102678 |
| PBX1 | pre-B-cell leukemia homeobox 1 | Entrez:5087 Ensembl: ENSG00000185630 HGNC: 8632 HPRD: 08889 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NIPBL | Nipped-B homolog (Drosophila) | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| SATB2 | SATB homeobox 2 | ||||
| FGF9 | fibroblast growth factor 9 | ||||
| PBX1 | pre-B-cell leukemia homeobox 1 |
| Query gene | Gene | Gene description | Edge score |
| NIPBL | NIPBL | Nipped-B homolog (Drosophila) | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| FGF9 | FGF9 | fibroblast growth factor 9 | |
| PBX1 | PBX1 | pre-B-cell leukemia homeobox 1 |