| Gene | Input weight | Standard | Rank | |
| SOX11 | - | - | 96 | |
| NCOA3 | - | - | 192 | |
| PPP1CA | - | - | 216 | |
| FGFR2 | - | -1 | 237 | |
| SOX4 | - | - | 250 | |
| LRP6 | - | - | 279 | |
| PPP3R1 | - | - | 321 | |
| SFRP1 | - | - | 387 | |
| PBX1 | - | - | 489 | |
| NR3C1 | - | - | 496 | |
| SALL1 | - | - | 506 | |
| RET | - | -1 | 524 | |
| PFN1 | - | - | 548 | |
| MYCN | - | - | 560 | |
| PAX2 | - | - | 653 | |
| LHX2 | - | - | 655 | |
| SLIT2 | - | - | 659 | |
| DICER1 | - | -1 | 762 | |
| ZIC3 | - | -1 | 789 | |
| TSC1 | 0.25 | 1 | 790 | |
| SMAD3 | - | - | 823 | |
| EDA | - | -1 | 925 | |
| NR4A3 | - | -1 | 963 | |
| SOX9 | - | -1 | 970 | |
| PTCH1 | - | -1 | 972 | |
| MED1 | - | - | 1034 | |
| HIF1A | - | - | 1075 | |
| BMP7 | - | - | 1137 | |
| MIB1 | 0.25 | 1 | 1153 | |
| LMO4 | - | - | 1244 | |
| MAP3K7 | - | - | 1275 | |
| DLC1 | - | - | 1282 | |
| ENAH | - | - | 1348 | |
| SEMA5A | 0.5 | 1 | 1388 | |
| SPRY2 | - | - | 1454 | |
| LEF1 | - | - | 1499 | |
| ZIC2 | - | -1 | 1609 | |
| ESR1 | 0.25 | 1 | 1791 | |
| VANGL2 | - | - | 1793 | |
| BTRC | - | - | 1884 | |
| AR | 0.25 | 1 | 1902 | |
| FOXA1 | - | - | 1990 | |
| PTHLH | - | -1 | 1993 | |
| GATA3 | - | - | 2376 | |
| COBL | 0.25 | 1 | 2536 | |
| FOXA2 | - | - | 2645 | |
| TULP3 | - | - | 2770 | |
| HHIP | - | - | 2786 | |
| IGF1 | 0.25 | 1 | 2793 | |
| NRP1 | - | - | 2807 | |
| NFATC3 | - | - | 2813 | |
| SRC | - | - | 2825 | |
| SRF | - | - | 2841 | |
| NOTCH1 | - | -1 | 2865 | |
| SKI | - | - | 2904 | |
| TFAP2A | - | -1 | 2923 | |
| PGR | - | - | 2926 | |
| C2CD3 | - | - | 2994 | |
| FOXD3 | - | - | 3025 | |
| CITED1 | - | - | 3064 | |
| DEAF1 | 1.0 | 1 | 3084 | |
| NODAL | - | -1 | 3149 | |
| FZD3 | - | - | 3193 | |
| TGIF1 | - | -1 | 3264 | |
| OPA1 | - | - | 3271 | |
| T | - | - | 3286 | |
| WNT5A | - | - | 3319 | |
| BCL2L11 | - | - | 3469 | |
| FOXF1 | - | -1 | 3518 | |
| DAG1 | - | - | 3580 | |
| HAND1 | - | - | 3590 | |
| DDR1 | - | - | 3647 | |
| DLG1 | - | - | 3822 | |
| EDNRA | - | -1 | 3857 | |
| FLT1 | 0.25 | 1 | 3953 | |
| IRX2 | - | - | 3967 | |
| SOX17 | - | - | 4024 | |
| VEGFA | 0.25 | 1 | 4087 | |
| NKX2-1 | - | - | 4142 | |
| RBM15 | - | - | 4247 | |
| WNT1 | - | - | 4383 | |
| HOXA11 | - | - | 4432 | |
| GBX2 | - | - | 4440 | |
| WT1 | - | -1 | 4514 | |
| FGF10 | - | -1 | 4532 | |
| ALX1 | - | - | 4544 | |
| SOX8 | - | - | 4609 | |
| RSPO2 | - | - | 4631 | |
| GDNF | - | -1 | 4658 | |
| FGF3 | - | - | 4687 | |
| WNT3A | - | - | 4747 | |
| RGMA | - | - | 4758 | |
| NKX3-1 | - | - | 4793 | |
| KDR | 0.25 | 1 | 4854 | |
| SDCCAG8 | - | -1 | 4872 | |
| KIF26B | - | - | 4895 | |
| HOXD11 | 0.25 | 1 | 5105 | |
| WNT6 | - | - | 5106 | |
| HOXA5 | - | - | 5132 | |
| SFRP2 | - | - | 5252 | |
| HAND2 | - | - | 5589 | |
| TCF21 | - | - | 5633 | |
| CTNNBIP1 | - | - | 5675 | |
| OSR1 | - | - | 5691 | |
| NTN1 | - | - | 6023 | |
| ACVR1 | - | -1 | 6054 | |
| PGF | - | - | 6172 | |
| FOXD2 | - | - | 6176 | |
| CELSR1 | - | - | 6180 | |
| NPNT | - | - | 6188 | |
| GLI3 | - | -1 | 6261 | |
| IFT122 | - | -1 | 6355 | |
| ZEB2 | - | - | 6361 | |
| BMP4 | - | -1 | 6499 | |
| CSF1 | - | - | 6542 | |
| DVL2 | - | - | 6546 | |
| PAX8 | - | -1 | 6637 | |
| GDF7 | - | - | 6682 | |
| IPMK | - | - | 6705 | |
| TWIST1 | - | -1 | 6980 | |
| GZF1 | - | - | 7072 | |
| IHH | - | -1 | 7160 | |
| LAMA5 | - | - | 7171 | |
| TINAG | - | - | 7232 | |
| ILK | - | - | 7305 | |
| GLI2 | - | -1 | 7307 | |
| IRX3 | - | - | 7476 | |
| FOXJ1 | - | - | 7628 | |
| CXCL12 | - | - | 7802 | |
| WNT11 | - | - | 7820 | |
| FOXD4L1 | - | - | 7836 | |
| VASP | - | - | 7880 | |
| FOXD1 | - | - | 7884 | |
| PSPN | - | - | 8112 | |
| WNT9B | - | - | 8217 | |
| KDM2B | - | - | 8359 | |
| GPC3 | - | -1 | 8430 | |
| NKX2-5 | 0.25 | 1 | 8486 | |
| TBX20 | - | -1 | 8764 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| LBX1 | - | - | 9134 | |
| RDH10 | - | - | 9300 | |
| TSC2 | 0.25 | 1 | 9351 | |
| SUFU | - | -1 | 9372 | |
| LRP5 | - | -1 | 9420 | |
| EDN1 | - | - | 9540 | |
| FOXD4L4 | - | - | 9599 | |
| CCL11 | - | - | 9615 | |
| HNF1B | - | -1 | 9881 | |
| SALL4 | - | - | 9929 | |
| BBS4 | - | -1 | 10131 | |
| FOXC2 | - | - | 10175 | |
| TGFBR2 | - | -1 | 10407 | |
| SMO | 0.25 | 1 | 10504 | |
| EDAR | - | -1 | 10537 | |
| BBS5 | - | -1 | 10945 | |
| FOXH1 | - | - | 10963 | |
| HS2ST1 | - | - | 11391 | |
| FOXD4 | - | - | 11635 | |
| SIX1 | - | -1 | 12393 | |
| LGR4 | - | - | 12407 | |
| GATA4 | - | -1 | 12466 | |
| MKS1 | - | -1 | 12791 | |
| EGF | 0.25 | 1 | 12881 | |
| FUZ | - | - | 12978 | |
| PODXL | - | - | 13125 | |
| FGF2 | - | - | 13150 | |
| AGT | - | -1 | 13305 | |
| PLXND1 | - | - | 13635 | |
| PTK7 | - | - | 13643 | |
| MESP1 | - | - | 13805 | |
| GJA1 | 0.25 | 1 | 13867 | |
| FOXD4L5 | - | - | 13951 | |
| MKKS | - | -1 | 14510 | |
| NRARP | - | - | 14597 | |
| GDF2 | - | - | 14603 | |
| FOXD4L2 | - | - | 16505 | |
| IFT52 | - | - | 16599 | |
| PSEN1 | - | - | 18523 | |
| SHH | - | -1 | 18571 | |
| NOTCH4 | - | - | 19230 | |
| TEAD2 | - | - | 19466 | |
| FOXD4L6 | - | - | 19555 | |
| PDPN | - | - | 19764 | |
| FZD6 | - | - | 19921 | |
| TGFB1 | 0.25 | 1 | 20135 | |
| FOXS1 | - | - | 20143 | |
| CD44 | - | - | 20701 | |
| SOX18 | - | - | 20812 | |
| ADM | - | - | 21106 | |
| KAT2A | - | - | 21262 | |
| WNT4 | - | - | 21809 | |
| VDR | - | - | 21837 | |
| BBS7 | - | -1 | 22032 | |
| BCL10 | - | -1 | 22368 | |
| TP63 | - | -1 | 22528 | |
| MYC | - | -1 | 22615 | |
| IFT172 | - | - | 22658 | |
| SETDB2 | 0.25 | 1 | 22691 | |
| B4GALT1 | - | -1 | 22700 | |
| CCM2 | - | - | 22768 | |
| TGM2 | - | - | 23204 | |
| CTSZ | - | - | 23228 | |
| SCRIB | - | - | 23676 | |
| CASP8 | - | -1 | 24587 | |
| TIMELESS | - | - | 24698 | |
| ENG | - | -1 | 24746 | |
| LIAS | - | - | 24813 | |
| PML | - | - | 25277 |
GO:0035239
| Name | Description | External IDs |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| NCOA3 | nuclear receptor coactivator 3 | Entrez:8202  HGNC: 7670  Ensembl: ENSG00000124151  HPRD: 03570  |
| PPP1CA | protein phosphatase 1, catalytic subunit, alpha isozyme | Entrez:5499  Ensembl: ENSG00000172531  HPRD: 15942  HGNC: 9281  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| SOX4 | SRY (sex determining region Y)-box 4 | Entrez:6659  HPRD: 01695  HGNC: 11200  Ensembl: ENSG00000124766  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| NCOA3 | nuclear receptor coactivator 3 | ||||
| PPP1CA | protein phosphatase 1, catalytic subunit, alpha isozyme | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| SOX4 | SRY (sex determining region Y)-box 4 |
| Query gene | Gene | Gene description | Edge score |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| NCOA3 | NCOA3 | nuclear receptor coactivator 3 | |
| PPP1CA | PPP1CA | protein phosphatase 1, catalytic subunit, alpha isozyme | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| SOX4 | SOX4 | SRY (sex determining region Y)-box 4 |