| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 200 | |
| APC | 0.25 | 1 | 266 | |
| SFRP1 | - | - | 387 | |
| SOX9 | - | -1 | 970 | |
| APC2 | - | - | 1115 | |
| AES | - | - | 1230 | |
| HDAC2 | - | - | 1440 | |
| LEF1 | - | - | 1499 | |
| LRP4 | - | - | 1500 | |
| MCC | - | - | 2167 | |
| STK4 | - | - | 2276 | |
| DKK2 | - | - | 2331 | |
| LATS1 | - | - | 2781 | |
| CTNND1 | - | - | 2948 | |
| EGR1 | - | - | 3062 | |
| WNT5A | - | - | 3319 | |
| DAB2IP | - | - | 3482 | |
| TCF7L2 | 0.5 | 1 | 3548 | |
| SIAH2 | - | - | 3729 | |
| SOX17 | - | - | 4024 | |
| AXIN2 | - | -1 | 4260 | |
| AXIN1 | - | -1 | 4419 | |
| CYLD | - | -1 | 4624 | |
| DRAXIN | - | - | 4717 | |
| SFRP2 | - | - | 5252 | |
| DKK3 | - | - | 5413 | |
| PRICKLE1 | - | -1 | 5552 | |
| GLI1 | - | - | 6241 | |
| GLI3 | - | -1 | 6261 | |
| TLE2 | - | - | 6532 | |
| SOST | - | - | 6885 | |
| SCYL2 | - | - | 7130 | |
| SFRP4 | - | - | 7310 | |
| WNT11 | - | - | 7820 | |
| FRZB | - | - | 8105 | |
| GPC3 | - | -1 | 8430 | |
| NKX2-5 | 0.25 | 1 | 8486 | |
| TBX18 | - | - | 8991 | |
| LATS2 | - | - | 9736 | |
| SFRP5 | - | - | 11273 | |
| DKK1 | - | - | 11567 | |
| NPHP3 | - | -1 | 13474 | |
| MESP1 | - | - | 13805 | |
| INVS | - | -1 | 14708 | |
| DDIT3 | - | - | 14883 | |
| WNT5B | - | - | 15534 | |
| SHH | - | -1 | 18571 | |
| FZD6 | - | - | 19921 | |
| FZD1 | - | - | 20775 | |
| STK3 | - | - | 21167 | |
| WNT4 | - | - | 21809 | |
| PFDN5 | - | - | 23272 | |
| CBY1 | - | - | 23816 | |
| SNAI2 | - | -1 | 23962 | |
| WWTR1 | - | - | 24317 | |
| DAB2 | - | - | 25338 | |
| CAV1 | - | -1 | 25381 |
GO:0090090
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| APC | adenomatous polyposis coli | Entrez:324  HGNC: 583  HPRD: 01439  Ensembl: ENSG00000134982  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| SOX9 | SRY (sex determining region Y)-box 9 | Entrez:6662  HPRD: 06427  HGNC: 11204  Ensembl: ENSG00000125398  |
| APC2 | adenomatosis polyposis coli 2 | Entrez:10297  Ensembl: ENSG00000115266  HGNC: 24036  HPRD: 09802  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| APC | adenomatous polyposis coli | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| SOX9 | SRY (sex determining region Y)-box 9 | ||||
| APC2 | adenomatosis polyposis coli 2 |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| APC | APC | adenomatous polyposis coli | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| SOX9 | SOX9 | SRY (sex determining region Y)-box 9 | |
| APC2 | APC2 | adenomatosis polyposis coli 2 |