| Gene | Input weight | Standard | Rank | |
| NEUROD1 | - | -1 | 127 | |
| PLXNA2 | - | - | 243 | |
| APC | 0.25 | 1 | 266 | |
| LRP6 | - | - | 279 | |
| BMPR2 | - | -1 | 281 | |
| HIPK1 | - | - | 311 | |
| MLLT3 | - | - | 383 | |
| SFRP1 | - | - | 387 | |
| YY1 | - | - | 419 | |
| PBX1 | - | - | 489 | |
| PCDH8 | - | - | 531 | |
| PAX6 | 0.25 | 1 | 544 | |
| PGAP1 | - | - | 711 | |
| PBX3 | - | - | 773 | |
| ZIC3 | - | -1 | 789 | |
| SMAD4 | - | - | 821 | |
| SMAD3 | - | - | 823 | |
| DLL3 | - | -1 | 847 | |
| ACVR2A | - | - | 965 | |
| PCSK6 | - | - | 1035 | |
| HIPK2 | - | - | 1051 | |
| BMPR1A | - | - | 1140 | |
| MIB1 | 0.25 | 1 | 1153 | |
| HOXD3 | - | - | 1195 | |
| PCGF2 | - | - | 1217 | |
| MEOX2 | - | - | 1224 | |
| FEZF2 | 0.25 | 1 | 1366 | |
| HOXD4 | - | - | 1445 | |
| LEF1 | - | - | 1499 | |
| WNT10B | - | - | 1517 | |
| ACVR2B | - | -1 | 1676 | |
| VANGL2 | - | - | 1793 | |
| OTX2 | - | -1 | 1916 | |
| DLL1 | - | - | 2053 | |
| HOXB8 | - | - | 2234 | |
| HOXB5 | - | - | 2288 | |
| EPB41L5 | - | - | 2335 | |
| SIX3 | - | -1 | 2494 | |
| LHX1 | - | - | 2560 | |
| TSHZ1 | - | - | 2619 | |
| FOXA2 | - | - | 2645 | |
| SMAD2 | - | - | 2694 | |
| SRF | - | - | 2841 | |
| HOXD9 | - | - | 2856 | |
| NOTCH1 | - | -1 | 2865 | |
| SKI | - | - | 2904 | |
| NR2F2 | - | - | 2941 | |
| TBX3 | - | - | 2958 | |
| CYP26A1 | - | - | 3009 | |
| NODAL | - | -1 | 3149 | |
| CRKL | - | - | 3156 | |
| T | - | - | 3286 | |
| BMI1 | - | - | 3300 | |
| WNT5A | - | - | 3319 | |
| WNT8B | - | - | 3407 | |
| HOXA7 | - | - | 3411 | |
| HOXA3 | - | - | 3427 | |
| HOXC8 | - | - | 3439 | |
| CDON | - | - | 3487 | |
| FOXF1 | - | -1 | 3518 | |
| ATM | - | -1 | 3622 | |
| ALDH1A2 | - | - | 3771 | |
| CDX2 | - | - | 4071 | |
| GDF11 | - | - | 4104 | |
| WNT16 | - | - | 4117 | |
| AXIN2 | - | -1 | 4260 | |
| HOXA2 | - | - | 4273 | |
| WNT1 | - | - | 4383 | |
| MYF6 | - | - | 4400 | |
| AXIN1 | - | -1 | 4419 | |
| GBX2 | - | - | 4440 | |
| HOXD10 | - | - | 4534 | |
| ALX1 | - | - | 4544 | |
| HOXB6 | - | - | 4560 | |
| OTX1 | - | - | 4602 | |
| WNT3 | - | - | 4613 | |
| WNT3A | - | - | 4747 | |
| NKX3-1 | - | - | 4793 | |
| HOXD13 | 0.25 | 1 | 4997 | |
| EN1 | - | - | 5021 | |
| WNT6 | - | - | 5106 | |
| HOXA5 | - | - | 5132 | |
| SFRP2 | - | - | 5252 | |
| FOXB1 | - | - | 5360 | |
| HOXC4 | - | - | 5536 | |
| CTNNBIP1 | - | - | 5675 | |
| CYP26C1 | - | - | 5830 | |
| CDX4 | - | - | 5849 | |
| HES1 | 0.25 | 1 | 5912 | |
| ALX4 | - | - | 5932 | |
| TDGF1 | - | - | 6132 | |
| CELSR1 | - | - | 6180 | |
| HOXC13 | - | - | 6219 | |
| GLI3 | - | -1 | 6261 | |
| ZEB2 | - | - | 6361 | |
| ABI1 | - | - | 6421 | |
| BMP4 | - | -1 | 6499 | |
| BARX1 | - | - | 6608 | |
| CDX1 | - | - | 6685 | |
| CER1 | - | - | 6956 | |
| HOXA6 | - | - | 7036 | |
| WNT7B | - | - | 7113 | |
| RNF2 | - | - | 7154 | |
| FRS2 | - | - | 7173 | |
| TGFBR1 | - | -1 | 7268 | |
| WNT7A | - | - | 7312 | |
| HOXD8 | - | - | 7316 | |
| TDRD5 | - | - | 7375 | |
| HES3 | - | - | 7466 | |
| RIPPLY2 | - | - | 7657 | |
| GRSF1 | - | - | 7797 | |
| WNT8A | - | - | 7814 | |
| WNT11 | - | - | 7820 | |
| MYF5 | - | - | 7875 | |
| LFNG | - | -1 | 7887 | |
| WNT9B | - | - | 8217 | |
| KDM2B | - | - | 8359 | |
| GPC3 | - | -1 | 8430 | |
| RARG | 0.25 | 1 | 8575 | |
| ARC | 0.25 | 1 | 8587 | |
| WNT10A | - | - | 8604 | |
| RING1 | - | - | 8843 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| LRP5 | - | -1 | 9420 | |
| RIPPLY1 | - | - | 9472 | |
| HNF1B | - | -1 | 9881 | |
| FOXC2 | - | - | 10175 | |
| HOXB4 | - | - | 10579 | |
| LDB1 | - | - | 10693 | |
| GDF3 | - | -1 | 10819 | |
| FOXH1 | - | - | 10963 | |
| HES7 | - | -1 | 10974 | |
| TCF7L1 | - | - | 12273 | |
| GATA4 | - | -1 | 12466 | |
| IFT88 | - | - | 12504 | |
| HOXB7 | - | - | 12742 | |
| MSGN1 | - | - | 12838 | |
| PCSK5 | - | - | 13062 | |
| HOXB1 | 0.25 | 1 | 13245 | |
| WNT9A | - | - | 13365 | |
| FOXC1 | - | -1 | 13793 | |
| WNT5B | - | - | 15534 | |
| WLS | - | - | 15707 | |
| FEZF1 | 0.25 | 1 | 16009 | |
| PSEN1 | - | - | 18523 | |
| SHH | - | -1 | 18571 | |
| HHEX | - | - | 19523 | |
| MEOX1 | - | - | 20002 | |
| FOXS1 | - | - | 20143 | |
| HOXB2 | - | - | 20538 | |
| POFUT1 | - | - | 20616 | |
| TCF15 | - | - | 20798 | |
| KAT2A | - | - | 21262 | |
| WNT4 | - | - | 21809 | |
| PLD6 | - | - | 21953 | |
| TCAP | - | -1 | 22131 | |
| MESP2 | - | -1 | 22723 | |
| PSEN2 | - | - | 23095 | |
| FZD5 | - | - | 23249 |
GO:0009952
| Name | Description | External IDs |
| NEUROD1 | neuronal differentiation 1 | Entrez:4760  HPRD: 03428  HGNC: 7762  Ensembl: ENSG00000162992  |
| PLXNA2 | plexin A2 | Entrez:5362  HPRD: 03033  Ensembl: ENSG00000076356  HGNC: 9100  |
| APC | adenomatous polyposis coli | Entrez:324  HGNC: 583  HPRD: 01439  Ensembl: ENSG00000134982  |
| LRP6 | low density lipoprotein receptor-related protein 6 | Entrez:4040  Ensembl: ENSG00000070018  HGNC: 6698  HPRD: 04617  |
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | Entrez:659  Ensembl: ENSG00000204217  HPRD: 02880  HGNC: 1078  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NEUROD1 | neuronal differentiation 1 | ||||
| PLXNA2 | plexin A2 | ||||
| APC | adenomatous polyposis coli | ||||
| LRP6 | low density lipoprotein receptor-related protein 6 | ||||
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) |
| Query gene | Gene | Gene description | Edge score |
| NEUROD1 | NEUROD1 | neuronal differentiation 1 | |
| PLXNA2 | PLXNA2 | plexin A2 | |
| APC | APC | adenomatous polyposis coli | |
| LRP6 | LRP6 | low density lipoprotein receptor-related protein 6 | |
| BMPR2 | BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) |