| Gene | Input weight | Standard | Rank | |
| NIPBL | - | -1 | 7 | |
| SOX11 | - | - | 96 | |
| SATB2 | 0.25 | 1 | 149 | |
| FGFR2 | - | -1 | 237 | |
| PLXNA2 | - | - | 243 | |
| SOX4 | - | - | 250 | |
| FGF9 | - | - | 262 | |
| LRP6 | - | - | 279 | |
| PDGFRA | - | -1 | 320 | |
| MYH10 | - | - | 366 | |
| NF1 | 0.25 | 1 | 372 | |
| SFRP1 | - | - | 387 | |
| APBA2 | 0.25 | 1 | 400 | |
| CHD7 | - | -1 | 416 | |
| PBX1 | - | - | 489 | |
| SALL1 | - | - | 506 | |
| ACVR1B | - | - | 510 | |
| SRSF1 | - | - | 516 | |
| PCDH8 | - | - | 531 | |
| PAX6 | 0.25 | 1 | 544 | |
| PFN1 | - | - | 548 | |
| MYCN | - | - | 560 | |
| SP3 | - | - | 562 | |
| ARNT2 | 0.25 | 1 | 601 | |
| PTPRR | - | - | 635 | |
| PAX2 | - | - | 653 | |
| LHX2 | - | - | 655 | |
| FOXG1 | - | - | 661 | |
| NCOA6 | - | - | 700 | |
| TSC1 | 0.25 | 1 | 790 | |
| SMARCA4 | - | - | 801 | |
| SMAD4 | - | - | 821 | |
| SMAD3 | - | - | 823 | |
| DLL3 | - | -1 | 847 | |
| ZMIZ1 | - | - | 861 | |
| ZFPM2 | - | -1 | 867 | |
| MAP2K1 | 0.25 | 1 | 907 | |
| CHRD | - | - | 941 | |
| MBNL1 | - | - | 956 | |
| ACVR2A | - | - | 965 | |
| PTCH1 | - | -1 | 972 | |
| PROX1 | - | - | 997 | |
| AKT1 | 0.25 | 1 | 1020 | |
| MED1 | - | - | 1034 | |
| NDEL1 | 0.25 | 1 | 1074 | |
| HIF1A | - | - | 1075 | |
| CUL3 | 1.0 | 1 | 1093 | |
| MAPK1 | - | - | 1128 | |
| BMP7 | - | - | 1137 | |
| BMPR1A | - | - | 1140 | |
| MIB1 | 0.25 | 1 | 1153 | |
| HOXD3 | - | - | 1195 | |
| GAB1 | - | - | 1198 | |
| PCGF2 | - | - | 1217 | |
| MEOX2 | - | - | 1224 | |
| LMO4 | - | - | 1244 | |
| MAP3K7 | - | - | 1275 | |
| DLC1 | - | - | 1282 | |
| AMOT | - | - | 1325 | |
| ENAH | - | - | 1348 | |
| HOXD4 | - | - | 1445 | |
| RUNX1 | - | -1 | 1449 | |
| LEF1 | - | - | 1499 | |
| WNT10B | - | - | 1517 | |
| SOX10 | - | -1 | 1520 | |
| JUNB | - | - | 1547 | |
| ZIC2 | - | -1 | 1609 | |
| COL4A3BP | - | - | 1742 | |
| COPS3 | - | - | 1764 | |
| PITPNB | - | - | 1770 | |
| VANGL2 | - | - | 1793 | |
| GNAS | - | -1 | 1842 | |
| AR | 0.25 | 1 | 1902 | |
| SOX6 | - | - | 1923 | |
| DLL1 | - | - | 2053 | |
| PRRX1 | - | - | 2125 | |
| HOXB8 | - | - | 2234 | |
| FGFR1 | - | - | 2262 | |
| MAPK8IP3 | - | - | 2274 | |
| HOXB5 | - | - | 2288 | |
| WNT2 | 0.25 | 1 | 2299 | |
| EPB41L5 | - | - | 2335 | |
| HOXD1 | - | - | 2342 | |
| DLX2 | 0.25 | 1 | 2357 | |
| GATA3 | - | - | 2376 | |
| SIN3A | - | - | 2391 | |
| DLX1 | 0.25 | 1 | 2400 | |
| TP53BP2 | - | - | 2477 | |
| TJP1 | - | - | 2480 | |
| ATP7A | - | -1 | 2483 | |
| COBL | 0.25 | 1 | 2536 | |
| EGFR | - | -1 | 2546 | |
| LHX1 | - | - | 2560 | |
| DSCAML1 | - | - | 2579 | |
| NKX3-2 | - | - | 2620 | |
| FOXA2 | - | - | 2645 | |
| CITED2 | - | - | 2650 | |
| TTPA | - | - | 2681 | |
| SMAD2 | - | - | 2694 | |
| COL11A1 | 0.25 | 1 | 2725 | |
| SHOX2 | - | - | 2767 | |
| TULP3 | - | - | 2770 | |
| SRF | - | - | 2841 | |
| HOXD9 | - | - | 2856 | |
| NOTCH1 | - | -1 | 2865 | |
| ADD1 | - | -1 | 2876 | |
| SKIL | - | - | 2889 | |
| SKI | - | - | 2904 | |
| TFAP2A | - | -1 | 2923 | |
| GRB2 | - | - | 2962 | |
| C2CD3 | - | - | 2994 | |
| UBE2A | 0.25 | 1 | 3019 | |
| FOXD3 | - | - | 3025 | |
| CITED1 | - | - | 3064 | |
| DEAF1 | 1.0 | 1 | 3084 | |
| MSX1 | - | -1 | 3127 | |
| ZFAND5 | - | - | 3128 | |
| NODAL | - | -1 | 3149 | |
| FZD3 | - | - | 3193 | |
| TGIF1 | - | -1 | 3264 | |
| OPA1 | - | - | 3271 | |
| T | - | - | 3286 | |
| GATA2 | - | -1 | 3291 | |
| BMI1 | - | - | 3300 | |
| WNT5A | - | - | 3319 | |
| RSPO3 | - | - | 3347 | |
| HOXA7 | - | - | 3411 | |
| HOXA3 | - | - | 3427 | |
| RBP4 | - | - | 3448 | |
| BCL2L11 | - | - | 3469 | |
| FOXF1 | - | -1 | 3518 | |
| MED21 | - | - | 3533 | |
| KIAA1217 | - | - | 3570 | |
| PAX7 | - | -1 | 3577 | |
| HAND1 | - | - | 3590 | |
| CEBPB | - | - | 3598 | |
| VEZT | - | - | 3608 | |
| ATM | - | -1 | 3622 | |
| SIX4 | - | - | 3738 | |
| ALDH1A2 | - | - | 3771 | |
| HOXB3 | - | - | 3793 | |
| DLG1 | - | - | 3822 | |
| TSHZ3 | - | - | 3848 | |
| EDNRA | - | -1 | 3857 | |
| ITGB1 | - | - | 3903 | |
| PRMT1 | - | - | 4008 | |
| UBE2B | - | - | 4057 | |
| CDX2 | - | - | 4071 | |
| VEGFA | 0.25 | 1 | 4087 | |
| HSF1 | - | - | 4101 | |
| MAFG | - | - | 4115 | |
| CUBN | - | - | 4185 | |
| SP1 | - | - | 4195 | |
| HS6ST1 | - | - | 4217 | |
| AXIN2 | - | -1 | 4260 | |
| HOXA2 | - | - | 4273 | |
| ALX3 | - | - | 4288 | |
| TET1 | - | - | 4338 | |
| PRDM1 | - | - | 4368 | |
| WNT1 | - | - | 4383 | |
| MYF6 | - | - | 4400 | |
| AXIN1 | - | -1 | 4419 | |
| GBX2 | - | - | 4440 | |
| ESRRB | 0.25 | 1 | 4453 | |
| HOXD10 | - | - | 4534 | |
| ALX1 | - | - | 4544 | |
| HOPX | - | - | 4550 | |
| LMX1B | 0.5 | 1 | 4551 | |
| HOXB6 | - | - | 4560 | |
| SOX8 | - | - | 4609 | |
| WNT3 | - | - | 4613 | |
| PLCG1 | - | - | 4744 | |
| WNT3A | - | - | 4747 | |
| RGMA | - | - | 4758 | |
| NKX3-1 | - | - | 4793 | |
| COL2A1 | - | -1 | 4839 | |
| MEN1 | - | -1 | 4917 | |
| HES5 | - | - | 4919 | |
| MECOM | - | - | 4979 | |
| EN1 | - | - | 5021 | |
| CYP1A1 | 0.25 | 1 | 5067 | |
| NDST1 | - | - | 5114 | |
| HOXA5 | - | - | 5132 | |
| TBX15 | - | - | 5222 | |
| SFRP2 | - | - | 5252 | |
| FOXB1 | - | - | 5360 | |
| NOG | - | -1 | 5439 | |
| HAND2 | - | - | 5589 | |
| ZNF358 | - | - | 5591 | |
| OSR1 | - | - | 5691 | |
| TBX1 | 0.25 | 1 | 5772 | |
| MNX1 | - | - | 5812 | |
| CDX4 | - | - | 5849 | |
| HES1 | 0.25 | 1 | 5912 | |
| ALX4 | - | - | 5932 | |
| AMBRA1 | - | - | 5959 | |
| ACVR1 | - | -1 | 6054 | |
| KEAP1 | - | - | 6103 | |
| CELSR1 | - | - | 6180 | |
| GLI3 | - | -1 | 6261 | |
| SIX2 | - | - | 6306 | |
| MSH2 | - | -1 | 6311 | |
| ALS2 | - | -1 | 6326 | |
| IFT122 | - | -1 | 6355 | |
| ZEB2 | - | - | 6361 | |
| XAB2 | - | - | 6412 | |
| ABI1 | - | - | 6421 | |
| BMP4 | - | -1 | 6499 | |
| DVL2 | - | - | 6546 | |
| BCL2L1 | - | - | 6563 | |
| FUT8 | - | - | 6626 | |
| TGFBR3 | - | - | 6672 | |
| GDF7 | - | - | 6682 | |
| KMT2D | - | - | 6700 | |
| IPMK | - | - | 6705 | |
| GAS1 | - | - | 6937 | |
| TWIST1 | - | -1 | 6980 | |
| HOXA6 | - | - | 7036 | |
| WNT7B | - | - | 7113 | |
| IHH | - | -1 | 7160 | |
| LIG4 | - | -1 | 7187 | |
| TAB1 | - | - | 7218 | |
| SLC30A1 | - | - | 7241 | |
| TGFBR1 | - | -1 | 7268 | |
| GLI2 | - | -1 | 7307 | |
| SLC34A2 | - | -1 | 7410 | |
| TAPT1 | - | - | 7465 | |
| HES3 | - | - | 7466 | |
| RIPPLY2 | - | - | 7657 | |
| WNT8A | - | - | 7814 | |
| WNT11 | - | - | 7820 | |
| MYF5 | - | - | 7875 | |
| VASP | - | - | 7880 | |
| UBR3 | - | - | 8003 | |
| DNMT3L | - | - | 8034 | |
| WNT9B | - | - | 8217 | |
| NMT1 | - | - | 8219 | |
| KDM2B | - | - | 8359 | |
| GCM1 | - | - | 8388 | |
| MYH9 | - | -1 | 8434 | |
| NKX2-5 | 0.25 | 1 | 8486 | |
| DUSP3 | - | - | 8506 | |
| NASP | - | - | 8601 | |
| C6 | - | - | 8602 | |
| TCF7 | - | - | 8813 | |
| NLRP5 | - | - | 8904 | |
| CHST11 | - | - | 9003 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| HORMAD1 | - | - | 9077 | |
| CEBPA | - | -1 | 9079 | |
| SNAI1 | - | - | 9198 | |
| RDH10 | - | - | 9300 | |
| TSC2 | 0.25 | 1 | 9351 | |
| SUFU | - | -1 | 9372 | |
| TIE1 | - | - | 9413 | |
| ESX1 | - | - | 9451 | |
| RIPPLY1 | - | - | 9472 | |
| TERF2 | - | - | 9505 | |
| EDN1 | - | - | 9540 | |
| GSC | - | - | 9702 | |
| HNF1B | - | -1 | 9881 | |
| SALL4 | - | - | 9929 | |
| BBS4 | - | -1 | 10131 | |
| FOXC2 | - | - | 10175 | |
| ASCL2 | - | - | 10237 | |
| EIF2S2 | - | - | 10269 | |
| TGFBR2 | - | -1 | 10407 | |
| SMO | 0.25 | 1 | 10504 | |
| HOXB4 | - | - | 10579 | |
| XRCC2 | - | - | 10672 | |
| GDF3 | - | -1 | 10819 | |
| GATA6 | - | -1 | 10828 | |
| EPAS1 | - | - | 10869 | |
| FOXH1 | - | - | 10963 | |
| HES7 | - | -1 | 10974 | |
| PYGO2 | - | - | 11014 | |
| DAD1 | - | - | 11136 | |
| TFEB | - | - | 11138 | |
| MFN2 | - | -1 | 11607 | |
| ACVRL1 | - | -1 | 11656 | |
| ACSL4 | - | - | 11803 | |
| NKX2-6 | - | -1 | 11887 | |
| LY6E | - | - | 12003 | |
| KDM1A | - | - | 12183 | |
| APBA3 | - | - | 12305 | |
| SIX1 | - | -1 | 12393 | |
| GATA4 | - | -1 | 12466 | |
| IFT88 | - | - | 12504 | |
| POLE | - | - | 12655 | |
| HOXB7 | - | - | 12742 | |
| ETNK2 | - | - | 12786 | |
| MSGN1 | - | - | 12838 | |
| SMARCB1 | - | -1 | 12857 | |
| EOMES | - | - | 12952 | |
| FUZ | - | - | 12978 | |
| PCSK5 | - | - | 13062 | |
| TGFB3 | - | -1 | 13097 | |
| CDK11A | - | - | 13193 | |
| WNT9A | - | - | 13365 | |
| FBXW8 | - | - | 13419 | |
| OOEP | - | - | 13495 | |
| MDFI | - | - | 13519 | |
| PTK7 | - | - | 13643 | |
| PLCD3 | - | - | 13791 | |
| FOXC1 | - | -1 | 13793 | |
| MYH6 | - | -1 | 13823 | |
| GJA1 | 0.25 | 1 | 13867 | |
| GNA12 | - | - | 14481 | |
| PHGDH | - | -1 | 14598 | |
| ELL | - | - | 14839 | |
| TAF8 | - | - | 14890 | |
| ZNF830 | - | - | 15040 | |
| TWIST2 | - | - | 15321 | |
| EVX1 | - | - | 15344 | |
| MBD3 | 0.25 | 1 | 15779 | |
| NBN | - | -1 | 16066 | |
| IFT52 | - | - | 16599 | |
| ZP3 | - | - | 17443 | |
| PSEN1 | - | - | 18523 | |
| SHH | - | -1 | 18571 | |
| DVL1P1 | - | - | 18731 | |
| DVL1 | - | - | 18924 | |
| INSL3 | - | -1 | 19059 | |
| CCNB1IP1 | - | - | 19175 | |
| TEAD2 | - | - | 19466 | |
| EPHA2 | - | -1 | 19467 | |
| HINFP | - | - | 19490 | |
| POU5F1 | - | - | 19704 | |
| FZD6 | - | - | 19921 | |
| MEOX1 | - | - | 20002 | |
| FOXS1 | - | - | 20143 | |
| RIC8A | - | - | 20379 | |
| ECE1 | - | -1 | 20540 | |
| POFUT1 | - | - | 20616 | |
| G2E3 | - | - | 20704 | |
| KLF2 | - | - | 20711 | |
| TCF15 | - | - | 20798 | |
| SOX18 | - | - | 20812 | |
| OSR2 | - | - | 20931 | |
| ADAM10 | - | - | 20986 | |
| PDGFB | - | - | 21071 | |
| ADM | - | - | 21106 | |
| SYVN1 | - | - | 21151 | |
| KAT2A | - | - | 21262 | |
| RPGRIP1L | - | - | 21472 | |
| SBDS | - | - | 21769 | |
| ERCC2 | - | -1 | 21804 | |
| CDK11B | - | - | 21881 | |
| C5 | - | -1 | 22004 | |
| BTF3 | - | - | 22049 | |
| TCAP | - | -1 | 22131 | |
| LIF | - | - | 22134 | |
| BCL10 | - | -1 | 22368 | |
| GJB5 | - | - | 22420 | |
| PLCD1 | - | - | 22496 | |
| CYR61 | - | - | 22574 | |
| IFT172 | - | - | 22658 | |
| SOCS3 | - | - | 22661 | |
| MESP2 | - | -1 | 22723 | |
| CCM2 | - | - | 22768 | |
| PRPF19 | - | - | 22991 | |
| RCN1 | - | - | 23013 | |
| PSEN2 | - | - | 23095 | |
| YBX1 | - | - | 23203 | |
| GJB3 | - | -1 | 23224 | |
| YBX3 | - | - | 23237 | |
| FZD5 | - | - | 23249 | |
| ALKBH1 | - | - | 23309 | |
| NSDHL | - | - | 23481 | |
| RBBP8 | - | - | 23530 | |
| CAPN2 | - | - | 23541 | |
| NCAPG2 | - | - | 23868 | |
| PRRX2 | - | - | 23936 | |
| SPINT1 | - | - | 23992 | |
| FLVCR1 | - | - | 24042 | |
| INPP5K | - | - | 24055 | |
| ENDOG | - | - | 24105 | |
| COL1A1 | - | -1 | 24140 | |
| ELF3 | - | - | 24187 | |
| KRT19 | - | - | 24520 | |
| BRCA1 | - | -1 | 24573 | |
| CASP8 | - | -1 | 24587 | |
| ADA | 0.5 | 1 | 24751 | |
| LIAS | - | - | 24813 | |
| PLOD3 | - | - | 24938 | |
| ICMT | - | - | 24975 | |
| RARRES2 | - | - | 25092 | |
| CCNB1 | - | - | 25174 | |
| XRCC4 | - | - | 25256 | |
| DAB2 | - | - | 25338 | |
| NLE1 | - | - | 25368 | |
| PLK4 | - | - | 25369 | |
| PGM3 | - | - | 25371 | |
| CCNB2 | - | - | 25384 | |
| GINS1 | - | - | 25480 | |
| TEAD4 | - | - | 25568 | |
| FXN | - | -1 | 25604 |
GO:0009792
| Name | Description | External IDs |
| NIPBL | Nipped-B homolog (Drosophila) | Entrez:25836  HPRD: 10560  HGNC: 28862  Ensembl: ENSG00000164190  |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| PLXNA2 | plexin A2 | Entrez:5362  HPRD: 03033  Ensembl: ENSG00000076356  HGNC: 9100  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NIPBL | Nipped-B homolog (Drosophila) | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| SATB2 | SATB homeobox 2 | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| PLXNA2 | plexin A2 |
| Query gene | Gene | Gene description | Edge score |
| NIPBL | NIPBL | Nipped-B homolog (Drosophila) | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| PLXNA2 | PLXNA2 | plexin A2 |