| Gene | Input weight | Standard | Rank | |
| PPP2CA | - | - | 20 | |
| BMPR2 | - | -1 | 281 | |
| PAX2 | - | - | 653 | |
| LHX2 | - | - | 655 | |
| SMAD4 | - | - | 821 | |
| SMAD3 | - | - | 823 | |
| DLL3 | - | -1 | 847 | |
| CHRD | - | - | 941 | |
| NR4A3 | - | -1 | 963 | |
| ACVR2A | - | - | 965 | |
| BMP7 | - | - | 1137 | |
| BMPR1A | - | - | 1140 | |
| LEF1 | - | - | 1499 | |
| SMAD1 | - | - | 1872 | |
| FGFR1 | - | - | 2262 | |
| EPB41L5 | - | - | 2335 | |
| PRKAR1A | - | -1 | 2428 | |
| SMAD2 | - | - | 2694 | |
| SRF | - | - | 2841 | |
| TBX3 | - | - | 2958 | |
| NODAL | - | -1 | 3149 | |
| T | - | - | 3286 | |
| FOXF1 | - | -1 | 3518 | |
| TSPY1 | - | - | 3537 | |
| HAND1 | - | - | 3590 | |
| KLF4 | - | - | 3609 | |
| VEGFA | 0.25 | 1 | 4087 | |
| GDF11 | - | - | 4104 | |
| WNT1 | - | - | 4383 | |
| AXIN1 | - | -1 | 4419 | |
| HOXA11 | - | - | 4432 | |
| WNT3 | - | - | 4613 | |
| WNT3A | - | - | 4747 | |
| EXT1 | 0.25 | 1 | 4780 | |
| IKZF3 | - | - | 5035 | |
| TCF21 | - | - | 5633 | |
| OSR1 | - | - | 5691 | |
| MEST | 0.25 | 1 | 5988 | |
| NF2 | - | -1 | 5991 | |
| TLX2 | - | - | 6047 | |
| ACVR1 | - | -1 | 6054 | |
| EYA2 | - | - | 6194 | |
| SIX2 | - | - | 6306 | |
| BMP4 | - | -1 | 6499 | |
| BMX | - | - | 7274 | |
| IRX3 | - | - | 7476 | |
| WNT8A | - | - | 7814 | |
| TBX20 | - | -1 | 8764 | |
| TSPY3 | - | - | 8807 | |
| SNAI1 | - | - | 9198 | |
| TSPY4 | - | - | 9406 | |
| TIE1 | - | - | 9413 | |
| TSPY2 | - | - | 9506 | |
| PRKACA | - | - | 9630 | |
| TDGF1P3 | - | - | 9765 | |
| FOXC2 | - | - | 10175 | |
| SMO | 0.25 | 1 | 10504 | |
| AMH | - | - | 10601 | |
| GDF3 | - | -1 | 10819 | |
| FOXH1 | - | - | 10963 | |
| HES7 | - | -1 | 10974 | |
| MATK | - | - | 11713 | |
| TCF7L1 | - | - | 12273 | |
| EOMES | - | - | 12952 | |
| TSPY8 | - | - | 13066 | |
| FOXC1 | - | -1 | 13793 | |
| MESP1 | - | - | 13805 | |
| TSPY10 | - | - | 14707 | |
| WLS | - | - | 15707 | |
| INHBA | - | - | 16974 | |
| SHH | - | -1 | 18571 | |
| IKZF1 | - | - | 19094 | |
| EPHA2 | - | -1 | 19467 | |
| JAK2 | - | -1 | 19561 | |
| FOXS1 | - | - | 20143 | |
| TXNRD1 | - | - | 20757 | |
| TCF15 | - | - | 20798 | |
| TBX6 | - | - | 21420 | |
| TRIM15 | - | - | 21614 | |
| BTK | - | -1 | 22251 | |
| HCK | - | - | 22517 | |
| TP63 | - | -1 | 22528 | |
| ECSIT | - | - | 22627 | |
| MESP2 | - | -1 | 22723 | |
| SECTM1 | - | - | 23329 | |
| MESDC2 | - | - | 23416 | |
| TWSG1 | - | - | 24840 | |
| EXT2 | - | -1 | 25243 |
GO:0007498
| Name | Description | External IDs |
| PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | Entrez:5515 HGNC: 9299 HPRD: 08912 |
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | Entrez:659 Ensembl: ENSG00000204217 HPRD: 02880 HGNC: 1078 |
| PAX2 | paired box 2 | Entrez:5076 HGNC: 8616 Ensembl: ENSG00000075891 HPRD: 01330 |
| LHX2 | LIM homeobox 2 | Entrez:9355 HPRD: 04786 HGNC: 6594 Ensembl: ENSG00000106689 |
| SMAD4 | SMAD family member 4 | Entrez:4089 Ensembl: ENSG00000141646 HGNC: 6770 HPRD: 02995 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | ||||
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | ||||
| PAX2 | paired box 2 | ||||
| LHX2 | LIM homeobox 2 | ||||
| SMAD4 | SMAD family member 4 |
| Query gene | Gene | Gene description | Edge score |
| PPP2CA | PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | |
| BMPR2 | BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | |
| PAX2 | PAX2 | paired box 2 | |
| LHX2 | LHX2 | LIM homeobox 2 | |
| SMAD4 | SMAD4 | SMAD family member 4 |