| Gene | Input weight | Standard | Rank | |
| NIPBL | - | -1 | 7 | |
| SMAD3 | - | - | 823 | |
| GNAS | - | -1 | 1842 | |
| PRRX1 | - | - | 2125 | |
| DLX2 | 0.25 | 1 | 2357 | |
| LHX1 | - | - | 2560 | |
| SMAD2 | - | - | 2694 | |
| TULP3 | - | - | 2770 | |
| TFAP2A | - | -1 | 2923 | |
| NODAL | - | -1 | 3149 | |
| SIX4 | - | - | 3738 | |
| HOXA2 | - | - | 4273 | |
| NDST1 | - | - | 5114 | |
| TBX15 | - | - | 5222 | |
| TBX1 | 0.25 | 1 | 5772 | |
| SIX2 | - | - | 6306 | |
| BMP4 | - | -1 | 6499 | |
| GAS1 | - | - | 6937 | |
| TWIST1 | - | -1 | 6980 | |
| TGFBR1 | - | -1 | 7268 | |
| WNT9B | - | - | 8217 | |
| CHST11 | - | - | 9003 | |
| RDH10 | - | - | 9300 | |
| FOXC2 | - | - | 10175 | |
| TGFBR2 | - | -1 | 10407 | |
| SMO | 0.25 | 1 | 10504 | |
| SIX1 | - | -1 | 12393 | |
| TGFB3 | - | -1 | 13097 | |
| TWIST2 | - | - | 15321 | |
| PRRX2 | - | - | 23936 |
GO:0048701
| Name | Description | External IDs |
| NIPBL | Nipped-B homolog (Drosophila) | Entrez:25836  HPRD: 10560  HGNC: 28862  Ensembl: ENSG00000164190  |
| SMAD3 | SMAD family member 3 | Entrez:4088  HPRD: 04380  HGNC: 6769  Ensembl: ENSG00000166949  |
| GNAS | GNAS complex locus | Entrez:2778  HGNC: 4392  HPRD: 00761  Ensembl: ENSG00000087460  |
| PRRX1 | paired related homeobox 1 | Entrez:5396  HPRD: 01337  HGNC: 9142  Ensembl: ENSG00000116132  |
| DLX2 | distal-less homeobox 2 | Entrez:1746  Ensembl: ENSG00000115844  HGNC: 2915  HPRD: 00527  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NIPBL | Nipped-B homolog (Drosophila) | ||||
| SMAD3 | SMAD family member 3 | ||||
| GNAS | GNAS complex locus | ||||
| PRRX1 | paired related homeobox 1 | ||||
| DLX2 | distal-less homeobox 2 |
| Query gene | Gene | Gene description | Edge score |
| NIPBL | NIPBL | Nipped-B homolog (Drosophila) | |
| SMAD3 | SMAD3 | SMAD family member 3 | |
| GNAS | GNAS | GNAS complex locus | |
| PRRX1 | PRRX1 | paired related homeobox 1 | |
| DLX2 | DLX2 | distal-less homeobox 2 |