| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 200 | |
| SMAD4 | - | - | 821 | |
| SMAD3 | - | - | 823 | |
| BMPR1A | - | - | 1140 | |
| PTHLH | - | -1 | 1993 | |
| DUSP5 | - | - | 2022 | |
| EPB41L5 | - | - | 2335 | |
| LHX1 | - | - | 2560 | |
| FOXA2 | - | - | 2645 | |
| SMAD2 | - | - | 2694 | |
| NOTCH1 | - | -1 | 2865 | |
| HOXC11 | - | - | 2906 | |
| NODAL | - | -1 | 3149 | |
| WNT8B | - | - | 3407 | |
| DUSP1 | - | - | 3785 | |
| DUSP4 | - | - | 4019 | |
| SOX17 | - | - | 4024 | |
| NANOG | - | - | 4083 | |
| NKX2-1 | - | - | 4142 | |
| EXT1 | 0.25 | 1 | 4780 | |
| SOX7 | - | - | 6117 | |
| WNT8A | - | - | 7814 | |
| WNT11 | - | - | 7820 | |
| WNT9B | - | - | 8217 | |
| ARC | 0.25 | 1 | 8587 | |
| DUSP2 | - | - | 8596 | |
| TBX20 | - | -1 | 8764 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| MIXL1 | - | - | 9839 | |
| HNF1B | - | -1 | 9881 | |
| GDF3 | - | -1 | 10819 | |
| GATA6 | - | -1 | 10828 | |
| DKK1 | - | - | 11567 | |
| PAX9 | - | -1 | 11940 | |
| GATA4 | - | -1 | 12466 | |
| EOMES | - | - | 12952 | |
| WNT9A | - | - | 13365 | |
| POU5F1 | - | - | 19704 | |
| TGFB1 | 0.25 | 1 | 20135 | |
| WNT4 | - | - | 21809 | |
| KIF16B | - | - | 22922 | |
| LAMC1 | - | - | 23363 |
GO:0007492
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| SMAD4 | SMAD family member 4 | Entrez:4089  Ensembl: ENSG00000141646  HGNC: 6770  HPRD: 02995  |
| SMAD3 | SMAD family member 3 | Entrez:4088  HPRD: 04380  HGNC: 6769  Ensembl: ENSG00000166949  |
| BMPR1A | bone morphogenetic protein receptor, type IA | Entrez:657  HGNC: 1076  Ensembl: ENSG00000107779  HPRD: 03192  |
| PTHLH | parathyroid hormone-like hormone | Entrez:5744  HPRD: 01348  Ensembl: ENSG00000087494  HGNC: 9607  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| SMAD4 | SMAD family member 4 | ||||
| SMAD3 | SMAD family member 3 | ||||
| BMPR1A | bone morphogenetic protein receptor, type IA | ||||
| PTHLH | parathyroid hormone-like hormone |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| SMAD4 | SMAD4 | SMAD family member 4 | |
| SMAD3 | SMAD3 | SMAD family member 3 | |
| BMPR1A | BMPR1A | bone morphogenetic protein receptor, type IA | |
| PTHLH | PTHLH | parathyroid hormone-like hormone |