| Gene | Input weight | Standard | Rank | |
| ATP2B2 | 0.5 | 1 | 3 | |
| NIPBL | - | -1 | 7 | |
| SOX11 | - | - | 96 | |
| NEUROD1 | - | -1 | 127 | |
| SATB2 | 0.25 | 1 | 149 | |
| ABR | - | - | 160 | |
| FGFR2 | - | -1 | 237 | |
| FGF9 | - | - | 262 | |
| LRP6 | - | - | 279 | |
| RARB | 0.25 | 1 | 300 | |
| HIPK1 | - | - | 311 | |
| CHD7 | - | -1 | 416 | |
| SALL1 | - | - | 506 | |
| MYCN | - | - | 560 | |
| SP3 | - | - | 562 | |
| PAX2 | - | - | 653 | |
| FOXG1 | - | - | 661 | |
| SMARCA4 | - | - | 801 | |
| SMAD3 | - | - | 823 | |
| ZIC1 | - | - | 939 | |
| NR4A3 | - | -1 | 963 | |
| SOX9 | - | -1 | 970 | |
| PROX1 | - | - | 997 | |
| HIPK2 | - | - | 1051 | |
| BMP7 | - | - | 1137 | |
| HOXD3 | - | - | 1195 | |
| PCGF2 | - | - | 1217 | |
| HOXD4 | - | - | 1445 | |
| SPRY2 | - | - | 1454 | |
| RAC1 | - | - | 1617 | |
| VANGL2 | - | - | 1793 | |
| BCR | - | -1 | 1839 | |
| GNAS | - | -1 | 1842 | |
| DVL3 | - | - | 2090 | |
| PRRX1 | - | - | 2125 | |
| ID2 | - | - | 2154 | |
| HOXB8 | - | - | 2234 | |
| FGFR1 | - | - | 2262 | |
| HOXB5 | - | - | 2288 | |
| DLX2 | 0.25 | 1 | 2357 | |
| MYO15A | - | -1 | 2469 | |
| INSIG1 | - | - | 2529 | |
| LHX1 | - | - | 2560 | |
| DSCAML1 | - | - | 2579 | |
| TSHZ1 | - | - | 2619 | |
| NKX3-2 | - | - | 2620 | |
| SMAD2 | - | - | 2694 | |
| SOD1 | - | -1 | 2702 | |
| DLX5 | - | - | 2706 | |
| COL11A1 | 0.25 | 1 | 2725 | |
| SHOX2 | - | - | 2767 | |
| TULP3 | - | - | 2770 | |
| HOXD9 | - | - | 2856 | |
| TFAP2A | - | -1 | 2923 | |
| DLX6 | 0.25 | 1 | 3129 | |
| NODAL | - | -1 | 3149 | |
| FZD3 | - | - | 3193 | |
| BMI1 | - | - | 3300 | |
| WNT5A | - | - | 3319 | |
| WNT8B | - | - | 3407 | |
| HOXA7 | - | - | 3411 | |
| RBP4 | - | - | 3448 | |
| FOXF1 | - | -1 | 3518 | |
| VAX2 | - | - | 3553 | |
| ITGA8 | - | - | 3626 | |
| FOXE3 | - | -1 | 3688 | |
| SIX4 | - | - | 3738 | |
| OTOP1 | - | - | 3757 | |
| HOXB3 | - | - | 3793 | |
| DLG1 | - | - | 3822 | |
| FOXE1 | - | -1 | 3900 | |
| WNT16 | - | - | 4117 | |
| SP1 | - | - | 4195 | |
| HOXA2 | - | - | 4273 | |
| ALX3 | - | - | 4288 | |
| WNT1 | - | - | 4383 | |
| AXIN1 | - | -1 | 4419 | |
| GBX2 | - | - | 4440 | |
| FGF10 | - | -1 | 4532 | |
| HOXD10 | - | - | 4534 | |
| ALX1 | - | - | 4544 | |
| OTX1 | - | - | 4602 | |
| WNT3 | - | - | 4613 | |
| NEUROG1 | 0.25 | 1 | 4644 | |
| FGF3 | - | - | 4687 | |
| WNT3A | - | - | 4747 | |
| COL2A1 | - | -1 | 4839 | |
| MEN1 | - | -1 | 4917 | |
| TH | 0.25 | 1 | 4933 | |
| NDST1 | - | - | 5114 | |
| HOXA5 | - | - | 5132 | |
| TBX15 | - | - | 5222 | |
| CLIC5 | - | - | 5291 | |
| NOG | - | -1 | 5439 | |
| TMIE | - | -1 | 5505 | |
| HOXC4 | - | - | 5536 | |
| TCF21 | - | - | 5633 | |
| OSR1 | - | - | 5691 | |
| TBX1 | 0.25 | 1 | 5772 | |
| ALX4 | - | - | 5932 | |
| CELSR1 | - | - | 6180 | |
| GLI3 | - | -1 | 6261 | |
| SIX2 | - | - | 6306 | |
| HMX2 | - | - | 6428 | |
| HMX3 | - | - | 6472 | |
| BMP4 | - | -1 | 6499 | |
| FOXI1 | - | -1 | 6510 | |
| DVL2 | - | - | 6546 | |
| GAS1 | - | - | 6937 | |
| TWIST1 | - | -1 | 6980 | |
| HOXA6 | - | - | 7036 | |
| IHH | - | -1 | 7160 | |
| FRS2 | - | - | 7173 | |
| POU4F3 | - | -1 | 7242 | |
| TGFBR1 | - | -1 | 7268 | |
| GJB6 | - | -1 | 7314 | |
| GRHL3 | - | - | 7409 | |
| FOXL2 | - | -1 | 7521 | |
| MYF5 | - | - | 7875 | |
| MYO7A | - | -1 | 8064 | |
| FRZB | - | - | 8105 | |
| WNT9B | - | - | 8217 | |
| KDM2B | - | - | 8359 | |
| RARG | 0.25 | 1 | 8575 | |
| TCF7 | - | - | 8813 | |
| CHST11 | - | - | 9003 | |
| RDH10 | - | - | 9300 | |
| LRP5 | - | -1 | 9420 | |
| EDN1 | - | - | 9540 | |
| FOXI2 | - | - | 9637 | |
| GSC | - | - | 9702 | |
| PRKRA | - | - | 9728 | |
| HNF1B | - | -1 | 9881 | |
| CHRNA10 | - | - | 10096 | |
| USH1G | - | -1 | 10139 | |
| FOXC2 | - | - | 10175 | |
| INSIG2 | - | - | 10252 | |
| TGFBR2 | - | -1 | 10407 | |
| SMO | 0.25 | 1 | 10504 | |
| CRYAA | - | - | 10509 | |
| ATP6V1B1 | - | - | 10564 | |
| HOXB4 | - | - | 10579 | |
| STRA6 | - | -1 | 10685 | |
| MAFB | - | - | 10783 | |
| CEP290 | - | -1 | 11184 | |
| ATOH1 | - | - | 11336 | |
| SIX1 | - | -1 | 12393 | |
| PTPRQ | - | -1 | 12427 | |
| GATA4 | - | -1 | 12466 | |
| HOXB7 | - | - | 12742 | |
| KCNQ4 | - | -1 | 12849 | |
| FUZ | - | - | 12978 | |
| TGFB3 | - | -1 | 13097 | |
| WNT9A | - | - | 13365 | |
| MDFI | - | - | 13519 | |
| PRKRAP1 | - | - | 13599 | |
| PTK7 | - | - | 13643 | |
| TWIST2 | - | - | 15321 | |
| FOXI3 | - | - | 15933 | |
| FZD2 | - | - | 16930 | |
| SHH | - | -1 | 18571 | |
| DVL1P1 | - | - | 18731 | |
| DVL1 | - | - | 18924 | |
| EPHA2 | - | -1 | 19467 | |
| FZD6 | - | - | 19921 | |
| HESX1 | - | - | 20692 | |
| OSR2 | - | - | 20931 | |
| EFNA1 | - | - | 21477 | |
| ALDH1A3 | - | - | 21739 | |
| TCAP | - | -1 | 22131 | |
| PRRX2 | - | - | 23936 | |
| NAGLU | - | -1 | 25261 |
GO:0048562
| Name | Description | External IDs |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | Entrez:491  HGNC: 815  Ensembl: ENSG00000157087  HPRD: 00160  |
| NIPBL | Nipped-B homolog (Drosophila) | Entrez:25836  HPRD: 10560  HGNC: 28862  Ensembl: ENSG00000164190  |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| NEUROD1 | neuronal differentiation 1 | Entrez:4760  HPRD: 03428  HGNC: 7762  Ensembl: ENSG00000162992  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | ||||
| NIPBL | Nipped-B homolog (Drosophila) | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| NEUROD1 | neuronal differentiation 1 | ||||
| SATB2 | SATB homeobox 2 |
| Query gene | Gene | Gene description | Edge score |
| ATP2B2 | ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | |
| NIPBL | NIPBL | Nipped-B homolog (Drosophila) | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| NEUROD1 | NEUROD1 | neuronal differentiation 1 | |
| SATB2 | SATB2 | SATB homeobox 2 |