| Gene | Input weight | Standard | Rank | |
| NIPBL | - | -1 | 7 | |
| SOX11 | - | - | 96 | |
| NFIB | - | - | 120 | |
| SATB2 | 0.25 | 1 | 149 | |
| GNAQ | - | - | 189 | |
| FGFR2 | - | -1 | 237 | |
| SOX4 | - | - | 250 | |
| FGF9 | - | - | 262 | |
| LRP6 | - | - | 279 | |
| RARB | 0.25 | 1 | 300 | |
| PDGFRA | - | -1 | 320 | |
| SFRP1 | - | - | 387 | |
| CHD7 | - | -1 | 416 | |
| MEF2C | 0.25 | 1 | 428 | |
| RUNX2 | - | -1 | 480 | |
| PBX1 | - | - | 489 | |
| MYCN | - | - | 560 | |
| SP3 | - | - | 562 | |
| NAB1 | - | - | 656 | |
| HDAC4 | - | - | 696 | |
| TRPS1 | - | -1 | 707 | |
| RPS6KA3 | - | - | 758 | |
| SMAD3 | - | - | 823 | |
| DLL3 | - | -1 | 847 | |
| CDH11 | - | - | 868 | |
| SHOX | - | - | 888 | |
| CHRD | - | - | 941 | |
| ACVR2A | - | - | 965 | |
| SOX9 | - | -1 | 970 | |
| HIF1A | - | - | 1075 | |
| COL9A1 | - | - | 1116 | |
| BMP7 | - | - | 1137 | |
| BMPR1A | - | - | 1140 | |
| SCHIP1 | - | - | 1178 | |
| HOXD3 | - | - | 1195 | |
| PCGF2 | - | - | 1217 | |
| AES | - | - | 1230 | |
| NAB2 | - | - | 1372 | |
| PRDX1 | - | - | 1407 | |
| HOXD4 | - | - | 1445 | |
| RUNX1 | - | -1 | 1449 | |
| WNT10B | - | - | 1517 | |
| GDF10 | - | - | 1535 | |
| COL9A2 | - | - | 1646 | |
| WNT2B | - | - | 1673 | |
| ACVR2B | - | -1 | 1676 | |
| UFD1L | - | - | 1755 | |
| GNAS | - | -1 | 1842 | |
| SOX6 | - | - | 1923 | |
| ETS2 | - | - | 1941 | |
| WHSC1 | - | - | 1948 | |
| PTHLH | - | -1 | 1993 | |
| PRRX1 | - | - | 2125 | |
| FBN2 | - | - | 2131 | |
| HOXB8 | - | - | 2234 | |
| MSX2 | - | -1 | 2260 | |
| FGFR1 | - | - | 2262 | |
| GNA11 | - | - | 2281 | |
| HOXB5 | - | - | 2288 | |
| BMPR1B | - | -1 | 2316 | |
| HOXD1 | - | - | 2342 | |
| DLX2 | 0.25 | 1 | 2357 | |
| DLX1 | 0.25 | 1 | 2400 | |
| ATP7A | - | -1 | 2483 | |
| INSIG1 | - | - | 2529 | |
| LHX1 | - | - | 2560 | |
| DSCAML1 | - | - | 2579 | |
| NKX3-2 | - | - | 2620 | |
| FGFR3 | - | -1 | 2640 | |
| GUSBP1 | - | - | 2643 | |
| SMAD2 | - | - | 2694 | |
| DLX5 | - | - | 2706 | |
| COL11A1 | 0.25 | 1 | 2725 | |
| SHOX2 | - | - | 2767 | |
| TULP3 | - | - | 2770 | |
| IGF1 | 0.25 | 1 | 2793 | |
| MEF2A | - | - | 2837 | |
| HOXD9 | - | - | 2856 | |
| TIPARP | - | - | 2888 | |
| SKI | - | - | 2904 | |
| TFAP2A | - | -1 | 2923 | |
| TBX3 | - | - | 2958 | |
| FOXD3 | - | - | 3025 | |
| DEAF1 | 1.0 | 1 | 3084 | |
| LECT1 | - | - | 3124 | |
| ZFAND5 | - | - | 3128 | |
| DLX6 | 0.25 | 1 | 3129 | |
| NODAL | - | -1 | 3149 | |
| BMI1 | - | - | 3300 | |
| WNT5A | - | - | 3319 | |
| AMELX | - | -1 | 3396 | |
| HOXA7 | - | - | 3411 | |
| HOXA3 | - | - | 3427 | |
| HOXC8 | - | - | 3439 | |
| RBP4 | - | - | 3448 | |
| KLF10 | - | - | 3457 | |
| ANKH | - | - | 3475 | |
| KIAA1217 | - | - | 3570 | |
| PAX7 | - | -1 | 3577 | |
| RARA | 0.25 | 1 | 3695 | |
| TLL1 | - | -1 | 3700 | |
| SIX4 | - | - | 3738 | |
| PAPSS1 | - | - | 3775 | |
| HOXB3 | - | - | 3793 | |
| DLG1 | - | - | 3822 | |
| CYP19A1 | 0.25 | 1 | 3823 | |
| LRRC17 | - | - | 3841 | |
| EXTL1 | - | - | 3881 | |
| PLEKHA1 | - | - | 3930 | |
| COL12A1 | - | - | 3944 | |
| MAPK14 | - | - | 3975 | |
| HOXA13 | - | - | 4036 | |
| GDF11 | - | - | 4104 | |
| LECT2 | - | - | 4161 | |
| TRAPPC2 | - | - | 4190 | |
| SP1 | - | - | 4195 | |
| GLG1 | - | - | 4233 | |
| ZBTB16 | - | - | 4249 | |
| BMP8A | - | - | 4253 | |
| AXIN2 | - | -1 | 4260 | |
| HOXA2 | - | - | 4273 | |
| ALX3 | - | - | 4288 | |
| BMP6 | - | - | 4358 | |
| MEPE | - | - | 4362 | |
| AXIN1 | - | -1 | 4419 | |
| HOXA11 | - | - | 4432 | |
| SULF1 | - | - | 4485 | |
| HOXD10 | - | - | 4534 | |
| ALX1 | - | - | 4544 | |
| HOXB6 | - | - | 4560 | |
| RSPO2 | - | - | 4631 | |
| PTH1R | - | - | 4648 | |
| CARM1 | - | - | 4755 | |
| INHA | - | - | 4765 | |
| EXT1 | 0.25 | 1 | 4780 | |
| COL2A1 | - | -1 | 4839 | |
| BMP2 | - | -1 | 4855 | |
| GDF5 | - | -1 | 4882 | |
| MEN1 | - | -1 | 4917 | |
| FGF4 | - | - | 4938 | |
| SRD5A1 | 0.25 | 1 | 4966 | |
| HOXD13 | 0.25 | 1 | 4997 | |
| CBS | 0.25 | 1 | 5018 | |
| EN1 | - | - | 5021 | |
| HOXD11 | 0.25 | 1 | 5105 | |
| NDST1 | - | - | 5114 | |
| HOXA5 | - | - | 5132 | |
| TBX15 | - | - | 5222 | |
| SFRP2 | - | - | 5252 | |
| RAI1 | - | - | 5351 | |
| NPR3 | - | - | 5370 | |
| RYK | - | - | 5383 | |
| NOG | - | -1 | 5439 | |
| BMP3 | - | - | 5467 | |
| HOXC4 | - | - | 5536 | |
| COL19A1 | - | - | 5611 | |
| BMP5 | - | - | 5641 | |
| OSR1 | - | - | 5691 | |
| TBX1 | 0.25 | 1 | 5772 | |
| SH3PXD2B | - | - | 5790 | |
| WWOX | - | -1 | 5791 | |
| ALX4 | - | - | 5932 | |
| PHEX | - | -1 | 6131 | |
| PRELP | - | - | 6140 | |
| FOXD2 | - | - | 6176 | |
| GLI3 | - | -1 | 6261 | |
| SIX2 | - | - | 6306 | |
| FOXL1 | - | - | 6313 | |
| FGF18 | - | - | 6382 | |
| MAPK3 | 0.25 | 1 | 6426 | |
| BMP4 | - | -1 | 6499 | |
| SPP2 | - | - | 6535 | |
| CREB3L2 | - | - | 6585 | |
| CDX1 | - | - | 6685 | |
| GAS1 | - | - | 6937 | |
| PTH | - | - | 6947 | |
| TWIST1 | - | -1 | 6980 | |
| HOXA6 | - | - | 7036 | |
| WNT7B | - | - | 7113 | |
| NPR2 | - | -1 | 7127 | |
| IHH | - | -1 | 7160 | |
| TGFBR1 | - | -1 | 7268 | |
| PAX1 | - | - | 7300 | |
| GLI2 | - | -1 | 7307 | |
| WNT7A | - | - | 7312 | |
| HOXD8 | - | - | 7316 | |
| OTOR | - | - | 7331 | |
| BMP8B | - | - | 7381 | |
| TAPT1 | - | - | 7465 | |
| COL10A1 | - | -1 | 7753 | |
| MMP13 | - | -1 | 7779 | |
| ADAMTS4 | - | - | 7795 | |
| WNT11 | - | - | 7820 | |
| FOXD4L1 | - | - | 7836 | |
| GH1 | - | - | 7858 | |
| MYF5 | - | - | 7875 | |
| FOXD1 | - | - | 7884 | |
| FRZB | - | - | 8105 | |
| TBX4 | - | - | 8189 | |
| HOXD12 | 0.25 | 1 | 8205 | |
| WNT9B | - | - | 8217 | |
| BARX2 | - | - | 8393 | |
| FGF8 | - | -1 | 8543 | |
| RARG | 0.25 | 1 | 8575 | |
| SULF2 | - | - | 8664 | |
| CHST11 | - | - | 9003 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| GJA5 | - | - | 9156 | |
| GHRL | 0.25 | 1 | 9242 | |
| RDH10 | - | - | 9300 | |
| NPPC | - | - | 9349 | |
| SUFU | - | -1 | 9372 | |
| LRP5 | - | -1 | 9420 | |
| EDN1 | - | - | 9540 | |
| FOXD4L4 | - | - | 9599 | |
| ACD | - | - | 9679 | |
| GSC | - | - | 9702 | |
| PRKRA | - | - | 9728 | |
| CHRDL2 | - | - | 9776 | |
| GHR | - | -1 | 10098 | |
| FOXC2 | - | - | 10175 | |
| INSIG2 | - | - | 10252 | |
| TGFBR2 | - | -1 | 10407 | |
| DBH | 0.25 | 1 | 10495 | |
| SMO | 0.25 | 1 | 10504 | |
| CLEC3A | - | - | 10574 | |
| HOXB4 | - | - | 10579 | |
| ARSE | - | - | 10656 | |
| FGFRL1 | - | - | 10721 | |
| POSTN | - | - | 10779 | |
| GDF3 | - | -1 | 10819 | |
| ALPL | - | -1 | 10901 | |
| ACAN | - | -1 | 10957 | |
| HES7 | - | -1 | 10974 | |
| FBN1 | - | -1 | 10976 | |
| CSRNP1 | - | - | 11067 | |
| SERP1 | - | - | 11460 | |
| AHSG | - | - | 11515 | |
| MATN3 | - | - | 11579 | |
| COL13A1 | - | - | 11586 | |
| FOXD4 | - | - | 11635 | |
| LEP | 0.25 | 1 | 11864 | |
| EVC | - | -1 | 11868 | |
| UNCX | - | - | 11898 | |
| SIX1 | - | -1 | 12393 | |
| IL17F | - | - | 12626 | |
| HOXB7 | - | - | 12742 | |
| FUZ | - | - | 12978 | |
| PCSK5 | - | - | 13062 | |
| TGFB3 | - | -1 | 13097 | |
| FGF2 | - | - | 13150 | |
| TRAPPC2P1 | - | - | 13322 | |
| WNT9A | - | - | 13365 | |
| MDFI | - | - | 13519 | |
| PRKRAP1 | - | - | 13599 | |
| FOXC1 | - | -1 | 13793 | |
| FOXD4L5 | - | - | 13951 | |
| COMP | - | -1 | 14438 | |
| GDF2 | - | - | 14603 | |
| CMKLR1 | - | - | 14683 | |
| FGF6 | - | - | 15185 | |
| EBP | - | - | 15294 | |
| TWIST2 | - | - | 15321 | |
| PPARGC1B | - | -1 | 15356 | |
| SGPL1 | - | - | 15362 | |
| WNT5B | - | - | 15534 | |
| FOXD4L2 | - | - | 16505 | |
| IQCJ-SCHIP1 | - | - | 17789 | |
| FBXW4 | - | - | 18142 | |
| PSEN1 | - | - | 18523 | |
| SHH | - | -1 | 18571 | |
| DSPP | - | -1 | 19446 | |
| EPHA2 | - | -1 | 19467 | |
| FOXD4L6 | - | - | 19555 | |
| TGFB1 | 0.25 | 1 | 20135 | |
| EIF2AK3 | - | - | 20456 | |
| HOXB2 | - | - | 20538 | |
| ANXA2 | - | - | 20584 | |
| TCF15 | - | - | 20798 | |
| BGLAP | - | - | 20875 | |
| OSR2 | - | - | 20931 | |
| ESRRA | - | - | 21277 | |
| TNFRSF11B | - | - | 21340 | |
| CLEC3B | - | - | 21405 | |
| HSD17B2 | 0.25 | 1 | 21493 | |
| IDUA | - | -1 | 21602 | |
| PITX1 | 0.25 | 1 | 21646 | |
| SBDS | - | - | 21769 | |
| VDR | - | - | 21837 | |
| LGALS3 | - | - | 22323 | |
| IGF2 | 0.25 | 1 | 22401 | |
| TP63 | - | -1 | 22528 | |
| CYR61 | - | - | 22574 | |
| TGFBI | - | - | 22585 | |
| COL1A2 | - | -1 | 22629 | |
| COL11A2 | - | -1 | 22646 | |
| COL3A1 | - | -1 | 22855 | |
| PAPSS2 | - | - | 22862 | |
| THBS3 | - | - | 23018 | |
| PRRX2 | - | - | 23936 | |
| IGFBP4 | - | - | 23943 | |
| MGP | - | - | 23957 | |
| COL1A1 | - | -1 | 24140 | |
| MMP9 | - | - | 24369 | |
| IMPAD1 | - | - | 24504 | |
| ACP2 | - | - | 24594 | |
| WDR5 | - | - | 24720 | |
| LUM | - | - | 24789 | |
| ACP5 | - | - | 25019 | |
| PEX7 | 0.25 | 1 | 25057 | |
| AEBP1 | - | - | 25129 | |
| BMP1 | - | - | 25134 | |
| TCOF1 | - | -1 | 25206 | |
| TYMS | - | - | 25226 | |
| HEXB | - | -1 | 25497 | |
| TEAD4 | - | - | 25568 | |
| MMP2 | - | - | 25584 |
GO:0001501
| Name | Description | External IDs |
| NIPBL | Nipped-B homolog (Drosophila) | Entrez:25836  HPRD: 10560  HGNC: 28862  Ensembl: ENSG00000164190  |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| NFIB | nuclear factor I/B | Entrez:4781  HGNC: 7785  Ensembl: ENSG00000147862  HPRD: 09008  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| GNAQ | guanine nucleotide binding protein (G protein), q polypeptide | Entrez:2776  HGNC: 4390  HPRD: 02998  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NIPBL | Nipped-B homolog (Drosophila) | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| NFIB | nuclear factor I/B | ||||
| SATB2 | SATB homeobox 2 | ||||
| GNAQ | guanine nucleotide binding protein (G protein), q polypeptide |
| Query gene | Gene | Gene description | Edge score |
| NIPBL | NIPBL | Nipped-B homolog (Drosophila) | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| NFIB | NFIB | nuclear factor I/B | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| GNAQ | GNAQ | guanine nucleotide binding protein (G protein), q polypeptide |