| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 200 | |
| LRP6 | - | - | 279 | |
| BMPR2 | - | -1 | 281 | |
| PAX2 | - | - | 653 | |
| SMAD4 | - | - | 821 | |
| SMAD3 | - | - | 823 | |
| CHRD | - | - | 941 | |
| NR4A3 | - | -1 | 963 | |
| CUL3 | 1.0 | 1 | 1093 | |
| BMP7 | - | - | 1137 | |
| BMPR1A | - | - | 1140 | |
| AMOT | - | - | 1325 | |
| LEF1 | - | - | 1499 | |
| SMAD1 | - | - | 1872 | |
| OTX2 | - | -1 | 1916 | |
| DUSP5 | - | - | 2022 | |
| TENM4 | - | - | 2243 | |
| EPB41L5 | - | - | 2335 | |
| PRKAR1A | - | -1 | 2428 | |
| LHX1 | - | - | 2560 | |
| FOXA2 | - | - | 2645 | |
| SMAD2 | - | - | 2694 | |
| SRF | - | - | 2841 | |
| NODAL | - | -1 | 3149 | |
| T | - | - | 3286 | |
| WNT5A | - | - | 3319 | |
| WNT8B | - | - | 3407 | |
| FOXF1 | - | -1 | 3518 | |
| HAND1 | - | - | 3590 | |
| KLF4 | - | - | 3609 | |
| DUSP1 | - | - | 3785 | |
| DUSP4 | - | - | 4019 | |
| SOX17 | - | - | 4024 | |
| NANOG | - | - | 4083 | |
| AXIN1 | - | -1 | 4419 | |
| HOXA11 | - | - | 4432 | |
| WNT3 | - | - | 4613 | |
| WNT3A | - | - | 4747 | |
| EXT1 | 0.25 | 1 | 4780 | |
| NF2 | - | -1 | 5991 | |
| TLX2 | - | - | 6047 | |
| ACVR1 | - | -1 | 6054 | |
| SOX7 | - | - | 6117 | |
| EYA2 | - | - | 6194 | |
| SIX2 | - | - | 6306 | |
| HIRA | - | - | 6325 | |
| BMP4 | - | -1 | 6499 | |
| CER1 | - | - | 6956 | |
| RNF2 | - | - | 7154 | |
| FRS2 | - | - | 7173 | |
| CFC1 | - | -1 | 7488 | |
| WNT8A | - | - | 7814 | |
| SUPT20H | - | - | 8074 | |
| FGF8 | - | -1 | 8543 | |
| DUSP2 | - | - | 8596 | |
| TBX20 | - | -1 | 8764 | |
| CTNNB1 | 0.5 | 1 | 9066 | |
| SNAI1 | - | - | 9198 | |
| LRP5 | - | -1 | 9420 | |
| PRKACA | - | - | 9630 | |
| GSC | - | - | 9702 | |
| TDGF1P3 | - | - | 9765 | |
| MIXL1 | - | - | 9839 | |
| BBS4 | - | -1 | 10131 | |
| FOXC2 | - | - | 10175 | |
| DLD | - | -1 | 10207 | |
| TGFBR2 | - | -1 | 10407 | |
| PPAP2B | - | - | 10628 | |
| LDB1 | - | - | 10693 | |
| GDF3 | - | -1 | 10819 | |
| FOXH1 | - | - | 10963 | |
| NAT8B | - | - | 12318 | |
| GATA4 | - | -1 | 12466 | |
| NAT8 | - | - | 12874 | |
| EOMES | - | - | 12952 | |
| FOXC1 | - | -1 | 13793 | |
| MESP1 | - | - | 13805 | |
| NSD1 | 0.25 | 1 | 14116 | |
| MKKS | - | -1 | 14510 | |
| WNT5B | - | - | 15534 | |
| WLS | - | - | 15707 | |
| INHBA | - | - | 16974 | |
| EPHA2 | - | -1 | 19467 | |
| CFC1B | - | - | 19685 | |
| POU5F1 | - | - | 19704 | |
| ARFRP1 | - | - | 20033 | |
| FOXS1 | - | - | 20143 | |
| JUP | - | -1 | 20291 | |
| TXNRD1 | - | - | 20757 | |
| UGDH | - | - | 21580 | |
| TRIM15 | - | - | 21614 | |
| ECSIT | - | - | 22627 | |
| MESP2 | - | -1 | 22723 | |
| KIF16B | - | - | 22922 | |
| TWSG1 | - | - | 24840 | |
| EXT2 | - | -1 | 25243 |
GO:0007369
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657 HGNC: 11195 HPRD: 08921 Ensembl: ENSG00000181449 |
| LRP6 | low density lipoprotein receptor-related protein 6 | Entrez:4040 Ensembl: ENSG00000070018 HGNC: 6698 HPRD: 04617 |
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | Entrez:659 Ensembl: ENSG00000204217 HPRD: 02880 HGNC: 1078 |
| PAX2 | paired box 2 | Entrez:5076 HGNC: 8616 Ensembl: ENSG00000075891 HPRD: 01330 |
| SMAD4 | SMAD family member 4 | Entrez:4089 Ensembl: ENSG00000141646 HGNC: 6770 HPRD: 02995 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| LRP6 | low density lipoprotein receptor-related protein 6 | ||||
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | ||||
| PAX2 | paired box 2 | ||||
| SMAD4 | SMAD family member 4 |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| LRP6 | LRP6 | low density lipoprotein receptor-related protein 6 | |
| BMPR2 | BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | |
| PAX2 | PAX2 | paired box 2 | |
| SMAD4 | SMAD4 | SMAD family member 4 |