| Gene | Input weight | Standard | Rank | |
| ATP2B2 | 0.5 | 1 | 1 | |
| SOX11 | - | - | 66 | |
| SATB2 | 0.25 | 1 | 108 | |
| NEUROD1 | - | -1 | 136 | |
| FGFR2 | - | -1 | 165 | |
| KMT2A | - | - | 205 | |
| ABR | - | - | 211 | |
| FGF9 | - | - | 241 | |
| AKT1 | 0.25 | 1 | 303 | |
| RARB | 0.25 | 1 | 325 | |
| SALL1 | - | - | 408 | |
| MYCN | - | - | 419 | |
| PAX2 | - | - | 459 | |
| MAP2K1 | 0.25 | 1 | 474 | |
| FOXG1 | - | - | 483 | |
| SP3 | - | - | 536 | |
| NIPBL | - | -1 | 561 | |
| NR4A3 | - | -1 | 594 | |
| TGFB2 | - | - | 625 | |
| SMARCA4 | - | - | 751 | |
| ZIC1 | - | - | 774 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| PBX1 | - | - | 823 | |
| CHD7 | - | -1 | 857 | |
| PROX1 | - | - | 962 | |
| MAPK1 | - | - | 985 | |
| BMP7 | - | - | 987 | |
| HIF1A | - | - | 1008 | |
| ZFPM2 | - | -1 | 1023 | |
| HIPK1 | - | - | 1034 | |
| RUNX1 | - | -1 | 1041 | |
| JUNB | - | - | 1044 | |
| SOX9 | - | -1 | 1045 | |
| RAC1 | - | - | 1087 | |
| HOXD4 | - | - | 1131 | |
| DLX2 | 0.25 | 1 | 1235 | |
| FOXF2 | - | - | 1315 | |
| NCOA6 | - | - | 1361 | |
| PCGF2 | - | - | 1393 | |
| INSIG1 | - | - | 1440 | |
| PRRX1 | - | - | 1491 | |
| SMAD3 | - | - | 1541 | |
| SPRY2 | - | - | 1552 | |
| ID2 | - | - | 1719 | |
| LEF1 | - | - | 1731 | |
| WNT2 | 0.25 | 1 | 1783 | |
| GAB1 | - | - | 1864 | |
| CITED1 | - | - | 1867 | |
| TTPA | - | - | 1875 | |
| LHX1 | - | - | 1926 | |
| VANGL2 | - | - | 1957 | |
| HOXB8 | - | - | 1971 | |
| NKX3-2 | - | - | 2048 | |
| TBX1 | 0.25 | 1 | 2049 | |
| BMPR1A | - | - | 2059 | |
| TAL1 | - | - | 2070 | |
| RBP4 | - | - | 2097 | |
| SHOX2 | - | - | 2149 | |
| BMI1 | - | - | 2175 | |
| NODAL | - | -1 | 2184 | |
| HOXD9 | - | - | 2201 | |
| MYO15A | - | -1 | 2209 | |
| DSCAML1 | - | - | 2267 | |
| FOXD3 | - | - | 2272 | |
| HIPK2 | - | - | 2306 | |
| GNAS | - | -1 | 2352 | |
| DLX5 | - | - | 2361 | |
| RSPO3 | - | - | 2379 | |
| TFAP2A | - | -1 | 2460 | |
| WNT8B | - | - | 2506 | |
| FGFR1 | - | - | 2550 | |
| COL11A1 | 0.25 | 1 | 2558 | |
| T | - | - | 2584 | |
| CDX2 | - | - | 2595 | |
| GRB2 | - | - | 2662 | |
| HOXB5 | - | - | 2669 | |
| GATA2 | - | -1 | 2710 | |
| HAND1 | - | - | 2763 | |
| BCR | - | -1 | 2801 | |
| EGFR | - | -1 | 2811 | |
| ALX3 | - | - | 2844 | |
| HOXD10 | - | - | 2845 | |
| CEBPB | - | - | 2850 | |
| WNT5A | - | - | 2870 | |
| VAX2 | - | - | 2965 | |
| ALX1 | - | - | 2966 | |
| FOXF1 | - | -1 | 3053 | |
| ITGA8 | - | - | 3151 | |
| FGF3 | - | - | 3192 | |
| WNT1 | - | - | 3263 | |
| FOXE3 | - | -1 | 3264 | |
| SOD1 | - | -1 | 3330 | |
| COL2A1 | - | -1 | 3352 | |
| FOXE1 | - | -1 | 3384 | |
| DLX6 | 0.25 | 1 | 3405 | |
| CITED2 | - | - | 3457 | |
| ALDH1A2 | - | - | 3466 | |
| NEUROG1 | 0.25 | 1 | 3515 | |
| MYO7A | - | -1 | 3526 | |
| FZD3 | - | - | 3579 | |
| GBX2 | - | - | 3588 | |
| HOXA2 | - | - | 3750 | |
| WNT16 | - | - | 3772 | |
| PRDM1 | - | - | 3852 | |
| TBX15 | - | - | 4012 | |
| HOXA7 | - | - | 4063 | |
| OTX1 | - | - | 4110 | |
| CDX4 | - | - | 4130 | |
| TSHZ1 | - | - | 4351 | |
| FGF10 | - | -1 | 4373 | |
| DVL3 | - | - | 4438 | |
| HOXC4 | - | - | 4616 | |
| SIX4 | - | - | 4623 | |
| VEGFA | 0.25 | 1 | 4691 | |
| IHH | - | -1 | 4742 | |
| WNT3 | - | - | 4799 | |
| WNT3A | - | - | 4844 | |
| HMX2 | - | - | 4879 | |
| OTOP1 | - | - | 4971 | |
| TCF21 | - | - | 5065 | |
| BMP4 | - | -1 | 5180 | |
| EPAS1 | - | - | 5248 | |
| TGFB3 | - | -1 | 5321 | |
| HS6ST1 | - | - | 5357 | |
| CLIC5 | - | - | 5373 | |
| FOXI1 | - | -1 | 5442 | |
| ALX4 | - | - | 5466 | |
| CELSR1 | - | - | 5539 | |
| HOXB3 | - | - | 5705 | |
| GLI2 | - | -1 | 5731 | |
| NDST1 | - | - | 5799 | |
| HOXA6 | - | - | 5800 | |
| SMO | 0.25 | 1 | 5864 | |
| GAS1 | - | - | 5960 | |
| FOXL2 | - | -1 | 6002 | |
| THOC5 | - | - | 6015 | |
| TGFBR1 | - | -1 | 6027 | |
| TWIST1 | - | -1 | 6128 | |
| GCM1 | - | - | 6140 | |
| POU4F3 | - | -1 | 6147 | |
| MYF5 | - | - | 6153 | |
| HSF1 | - | - | 6191 | |
| OSR1 | - | - | 6192 | |
| TH | 0.25 | 1 | 6482 | |
| MED1 | - | - | 6574 | |
| SIX2 | - | - | 6713 | |
| MEN1 | - | -1 | 6723 | |
| GRHL3 | - | - | 6732 | |
| SH2B3 | - | -1 | 6883 | |
| GJB6 | - | -1 | 6896 | |
| CRYAA | - | - | 6901 | |
| ESX1 | - | - | 6920 | |
| HOXA5 | - | - | 7014 | |
| WNT8A | - | - | 7061 | |
| HMX3 | - | - | 7138 | |
| SMAD2 | - | - | 7224 | |
| CHST11 | - | - | 7380 | |
| TMIE | - | -1 | 7608 | |
| STRA6 | - | -1 | 7612 | |
| NOG | - | -1 | 7650 | |
| MAFB | - | - | 7672 | |
| WNT7B | - | - | 7693 | |
| GSC | - | - | 8075 | |
| FOXC2 | - | - | 8308 | |
| USH1G | - | -1 | 8423 | |
| SNAI1 | - | - | 8474 | |
| WNT9B | - | - | 8495 | |
| TULP3 | - | - | 8569 | |
| KDM2B | - | - | 8663 | |
| ASCL2 | - | - | 8695 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| IL8 | - | - | 9093 | |
| ATOH1 | - | - | 9258 | |
| GDF3 | - | -1 | 9473 | |
| ATP6V1B1 | - | - | 9514 | |
| FRZB | - | - | 9553 | |
| HNF1B | - | -1 | 9562 | |
| EDN1 | - | - | 9566 | |
| RDH10 | - | - | 9600 | |
| TGFBR2 | - | -1 | 9756 | |
| CHRNA10 | - | - | 9844 | |
| HOXB7 | - | - | 10514 | |
| DLG1 | - | - | 10557 | |
| FUZ | - | - | 10698 | |
| ADM | - | - | 10761 | |
| AXIN1 | - | -1 | 10905 | |
| RARG | 0.25 | 1 | 10956 | |
| GATA4 | - | -1 | 11137 | |
| NES | - | - | 11295 | |
| EOMES | - | - | 11394 | |
| CEBPA | - | -1 | 11468 | |
| MDFI | - | - | 11799 | |
| PCSK5 | - | - | 12160 | |
| DVL2 | - | - | 12293 | |
| INSIG2 | - | - | 12416 | |
| SP1 | - | - | 12422 | |
| PDGFB | - | - | 12484 | |
| FRS2 | - | - | 12610 | |
| PRKRA | - | - | 12617 | |
| FOXI2 | - | - | 12798 | |
| IFT88 | - | - | 12821 | |
| DDIT3 | - | - | 12944 | |
| PKDCC | - | - | 13669 | |
| PLCD3 | - | - | 13904 | |
| FZD2 | - | - | 13981 | |
| PTPRQ | - | -1 | 14032 | |
| FBXW8 | - | - | 14094 | |
| WNT9A | - | - | 14123 | |
| EPHA2 | - | -1 | 14150 | |
| TCAP | - | -1 | 14527 | |
| TWIST2 | - | - | 14594 | |
| NOTO | - | - | 14851 | |
| TCF7 | - | - | 14920 | |
| SIX1 | - | -1 | 15117 | |
| SOCS3 | - | - | 15768 | |
| ALDH1A3 | - | - | 15783 | |
| TFEB | - | - | 15921 | |
| SHH | - | -1 | 15942 | |
| LRP5 | - | -1 | 16985 | |
| FOXI3 | - | - | 17045 | |
| ERCC1 | - | - | 18433 | |
| OSR2 | - | - | 18904 | |
| DVL1P1 | - | - | 19166 | |
| CYR61 | - | - | 19764 | |
| TNF | 0.25 | 1 | 19823 | |
| FZD6 | - | - | 19825 | |
| ID3 | - | - | 20004 | |
| GJB5 | - | - | 20339 | |
| HESX1 | - | - | 20697 | |
| PTK7 | - | - | 20787 | |
| LIF | - | - | 20888 | |
| KCNQ4 | - | -1 | 20957 | |
| DVL1 | - | - | 21155 | |
| PRKRAP1 | - | - | 21445 | |
| CEP290 | - | -1 | 21573 | |
| EFNA1 | - | - | 21813 | |
| FZD5 | - | - | 21891 | |
| PLCD1 | - | - | 22552 | |
| NSDHL | - | - | 22683 | |
| PRRX2 | - | - | 23414 | |
| ADA | 0.5 | 1 | 24175 | |
| PPP1R13L | - | - | 24182 | |
| RARRES2 | - | - | 24275 | |
| SPINT1 | - | - | 24598 | |
| KRT19 | - | - | 24921 | |
| NAGLU | - | -1 | 25404 | |
| PLK4 | - | - | 25448 |
GO:0048568
| Name | Description | External IDs |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | Entrez:491  HGNC: 815  Ensembl: ENSG00000157087  HPRD: 00160  |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| NEUROD1 | neuronal differentiation 1 | Entrez:4760  HPRD: 03428  HGNC: 7762  Ensembl: ENSG00000162992  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| SATB2 | SATB homeobox 2 | ||||
| NEUROD1 | neuronal differentiation 1 | ||||
| FGFR2 | fibroblast growth factor receptor 2 |
| Query gene | Gene | Gene description | Edge score |
| ATP2B2 | ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| NEUROD1 | NEUROD1 | neuronal differentiation 1 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 |