| Gene | Input weight | Standard | Rank | |
| ATP2B2 | 0.5 | 1 | 1 | |
| ERBB4 | 0.25 | 1 | 64 | |
| SOX2 | - | -1 | 125 | |
| FGFR2 | - | -1 | 165 | |
| SFRP1 | - | - | 204 | |
| ASCL1 | - | - | 229 | |
| PDGFRA | - | -1 | 233 | |
| NRG1 | 0.25 | 1 | 285 | |
| CRH | - | - | 328 | |
| NF1 | 0.25 | 1 | 333 | |
| PAX6 | 0.25 | 1 | 355 | |
| SALL1 | - | - | 408 | |
| NR3C1 | - | - | 463 | |
| PCSK1 | - | - | 604 | |
| EDA | - | -1 | 615 | |
| TGFB2 | - | - | 625 | |
| IGF1R | - | - | 631 | |
| POU3F2 | - | - | 653 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| PBX1 | - | - | 823 | |
| NEURL | - | - | 846 | |
| UBE3A | 0.25 | 1 | 917 | |
| ERBB3 | - | - | 921 | |
| PRLR | 0.25 | 1 | 955 | |
| MAPK1 | - | - | 985 | |
| BMP7 | - | - | 987 | |
| CREB1 | - | - | 991 | |
| PRL | 0.25 | 1 | 992 | |
| SOX9 | - | -1 | 1045 | |
| IRS1 | - | -1 | 1052 | |
| PTCH1 | - | -1 | 1149 | |
| NCOA3 | - | - | 1178 | |
| PTHLH | - | -1 | 1269 | |
| TSPO | 0.25 | 1 | 1277 | |
| CDO1 | - | - | 1319 | |
| ISL1 | - | - | 1441 | |
| AR | 0.25 | 1 | 1499 | |
| SMAD3 | - | - | 1541 | |
| IRS2 | - | -1 | 1607 | |
| NR0B1 | - | -1 | 1715 | |
| ID2 | - | - | 1719 | |
| LEF1 | - | - | 1731 | |
| WNT2 | 0.25 | 1 | 1783 | |
| ESR1 | 0.25 | 1 | 1914 | |
| CGA | 0.25 | 1 | 1927 | |
| NRP1 | - | - | 1961 | |
| IGF1 | 0.25 | 1 | 1993 | |
| FGF7 | - | - | 1995 | |
| SOX3 | - | - | 2042 | |
| TBX1 | 0.25 | 1 | 2049 | |
| BMPR1A | - | - | 2059 | |
| DRD2 | 0.25 | 1 | 2071 | |
| SEMA3A | - | - | 2076 | |
| SRC | - | - | 2241 | |
| PTEN | 1.0 | 1 | 2260 | |
| FOXA1 | - | - | 2277 | |
| GHRHR | - | - | 2312 | |
| BTRC | - | - | 2430 | |
| SLC30A4 | 0.25 | 1 | 2449 | |
| NKX2-1 | - | - | 2488 | |
| FGFR1 | - | - | 2550 | |
| IGFBP5 | - | - | 2665 | |
| GATA2 | - | -1 | 2710 | |
| PGR | - | - | 2715 | |
| NKX3-1 | - | - | 2779 | |
| EGFR | - | -1 | 2811 | |
| CEBPB | - | - | 2850 | |
| WNT5A | - | - | 2870 | |
| SERPINE2 | - | - | 2896 | |
| RXFP1 | - | - | 2904 | |
| GSX1 | - | - | 2967 | |
| PAX8 | - | -1 | 3021 | |
| WT1 | - | -1 | 3046 | |
| FOXF1 | - | -1 | 3053 | |
| APRT | - | - | 3089 | |
| CYP17A1 | 0.25 | 1 | 3171 | |
| CSF1 | - | - | 3235 | |
| FOXE3 | - | -1 | 3264 | |
| CYP19A1 | 0.25 | 1 | 3314 | |
| NOTCH1 | - | -1 | 3360 | |
| FOXE1 | - | -1 | 3384 | |
| CITED2 | - | - | 3457 | |
| ALDH1A2 | - | - | 3466 | |
| HOXA3 | - | - | 3502 | |
| SFRP4 | - | - | 3511 | |
| HOXA13 | - | - | 3602 | |
| MET | 1.0 | 1 | 3618 | |
| DAG1 | - | - | 3662 | |
| SRD5A1 | 0.25 | 1 | 3730 | |
| TBX3 | - | - | 3843 | |
| STAT5B | - | - | 3888 | |
| ELF5 | - | - | 3925 | |
| PLAUR | - | - | 3929 | |
| DKK3 | - | - | 4056 | |
| ATP7B | - | -1 | 4074 | |
| FOXB1 | - | - | 4202 | |
| DDR1 | - | - | 4212 | |
| GCM2 | - | - | 4344 | |
| FGF10 | - | -1 | 4373 | |
| HOXD13 | 0.25 | 1 | 4465 | |
| OXTR | 0.5 | 1 | 4494 | |
| OTP | - | - | 4497 | |
| WNT11 | - | - | 4528 | |
| GHRH | - | - | 4568 | |
| IL6 | - | -1 | 4578 | |
| TNFRSF11A | - | -1 | 4672 | |
| CST3 | - | -1 | 4680 | |
| VEGFA | 0.25 | 1 | 4691 | |
| HOXB13 | - | - | 4705 | |
| WNT3 | - | - | 4799 | |
| WNT3A | - | - | 4844 | |
| PSAP | - | - | 4990 | |
| PLAG1 | - | -1 | 5007 | |
| CD44 | - | - | 5047 | |
| TCF21 | - | - | 5065 | |
| GC | - | - | 5146 | |
| BMP4 | - | -1 | 5180 | |
| ETS1 | - | - | 5230 | |
| NTN1 | - | - | 5275 | |
| SLC6A3 | 0.25 | 1 | 5276 | |
| TGFB3 | - | -1 | 5321 | |
| BCL2L11 | - | - | 5454 | |
| NKX2-5 | 0.25 | 1 | 5490 | |
| NKX2-3 | - | - | 5540 | |
| HES1 | 0.25 | 1 | 5662 | |
| HOXB3 | - | - | 5705 | |
| GLI2 | - | -1 | 5731 | |
| SMO | 0.25 | 1 | 5864 | |
| USF2 | - | - | 5959 | |
| TGFBR1 | - | -1 | 6027 | |
| TPH1 | 0.25 | 1 | 6110 | |
| SEMA3C | - | - | 6197 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| CRKL | - | - | 6254 | |
| ZNF703 | - | - | 6470 | |
| MED1 | - | - | 6574 | |
| TBX2 | - | - | 6701 | |
| TDGF1 | - | - | 6833 | |
| CTNND1 | - | - | 6834 | |
| HOXA5 | - | - | 7014 | |
| CCL11 | - | - | 7037 | |
| APLN | - | - | 7473 | |
| GDF7 | - | - | 7494 | |
| TNFSF11 | - | -1 | 7511 | |
| NR5A1 | - | -1 | 7588 | |
| STRA6 | - | -1 | 7612 | |
| NOG | - | -1 | 7650 | |
| WNT7B | - | - | 7693 | |
| EDAR | - | -1 | 7761 | |
| GLI3 | - | -1 | 9032 | |
| LY6E | - | - | 9169 | |
| WNT10A | - | - | 9302 | |
| FRZB | - | - | 9553 | |
| FGF2 | - | - | 9627 | |
| TGFBR2 | - | -1 | 9756 | |
| DUOX2 | - | -1 | 9797 | |
| RARG | 0.25 | 1 | 10956 | |
| PMCH | - | - | 11242 | |
| AHR | - | - | 11579 | |
| NOTCH4 | - | - | 12179 | |
| TG | - | - | 12189 | |
| PDGFB | - | - | 12484 | |
| FRS2 | - | - | 12610 | |
| TNC | - | - | 13117 | |
| PLXND1 | - | - | 13176 | |
| TGM2 | - | - | 13660 | |
| ARG1 | - | -1 | 14097 | |
| TFCP2L1 | - | - | 14235 | |
| TGFB1 | 0.25 | 1 | 14736 | |
| TBX19 | - | - | 14813 | |
| RXRA | 0.25 | 1 | 15046 | |
| SIX1 | - | -1 | 15117 | |
| COX2 | - | - | 15613 | |
| BSX | - | - | 15697 | |
| ALDH1A3 | - | - | 15783 | |
| SHH | - | -1 | 15942 | |
| KDM1A | - | - | 15967 | |
| LRP5 | - | -1 | 16985 | |
| LAMA5 | - | - | 19186 | |
| STAT5A | - | - | 19316 | |
| TNF | 0.25 | 1 | 19823 | |
| JAK2 | - | -1 | 20033 | |
| VDR | - | - | 20212 | |
| SERPINB5 | - | - | 20321 | |
| XBP1 | - | - | 20701 | |
| AGPAT6 | - | - | 21080 | |
| FDX1 | - | - | 21406 | |
| ERBB2 | - | -1 | 21638 | |
| B4GALT1 | - | -1 | 21783 | |
| WNT4 | - | - | 21840 | |
| HK2 | - | - | 22228 | |
| MDK | - | - | 22267 | |
| SLC29A1 | - | - | 22435 | |
| FOXC1 | - | -1 | 22868 | |
| PITX1 | 0.25 | 1 | 23078 | |
| CDH1 | - | -1 | 23441 | |
| IRF6 | - | -1 | 23525 | |
| SLC29A2 | - | - | 23945 | |
| TP63 | - | -1 | 24113 | |
| ELF3 | - | - | 24286 | |
| ALOX15B | - | - | 24304 | |
| SCRIB | - | - | 24455 | |
| FSTL3 | - | - | 24700 | |
| CAV1 | - | -1 | 24767 | |
| BRCA2 | - | -1 | 24829 | |
| MGMT | - | - | 25043 | |
| TWSG1 | - | - | 25171 | |
| PML | - | - | 25248 | |
| BCAT2 | - | - | 25612 | |
| PPAT | - | - | 25757 |
GO:0048732
| Name | Description | External IDs |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | Entrez:491  HGNC: 815  Ensembl: ENSG00000157087  HPRD: 00160  |
| ERBB4 | v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 | Entrez:2066  HGNC: 3432  HPRD: 02767  Ensembl: ENSG00000178568  |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | ||||
| ERBB4 | v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 | ||||
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| SFRP1 | secreted frizzled-related protein 1 |
| Query gene | Gene | Gene description | Edge score |
| ATP2B2 | ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | |
| ERBB4 | ERBB4 | v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 | |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 |