| Gene | Input weight | Standard | Rank | |
| ATP2B2 | 0.5 | 1 | 1 | |
| SOX11 | - | - | 66 | |
| PFN1 | - | - | 74 | |
| SATB2 | 0.25 | 1 | 108 | |
| SOX2 | - | -1 | 125 | |
| NEUROD1 | - | -1 | 136 | |
| FGFR2 | - | -1 | 165 | |
| SFRP1 | - | - | 204 | |
| ABR | - | - | 211 | |
| FGF9 | - | - | 241 | |
| RARB | 0.25 | 1 | 325 | |
| LHX2 | - | - | 362 | |
| RET | - | -1 | 384 | |
| SALL1 | - | - | 408 | |
| MYCN | - | - | 419 | |
| PCDH8 | - | - | 440 | |
| PAX2 | - | - | 459 | |
| FOXG1 | - | - | 483 | |
| GNAQ | - | - | 490 | |
| SP3 | - | - | 536 | |
| NIPBL | - | -1 | 561 | |
| SOX4 | - | - | 581 | |
| NR4A3 | - | -1 | 594 | |
| CHRD | - | - | 697 | |
| ZIC3 | - | -1 | 722 | |
| SMARCA4 | - | - | 751 | |
| ZIC1 | - | - | 774 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| PBX1 | - | - | 823 | |
| DICER1 | - | -1 | 834 | |
| CHD7 | - | -1 | 857 | |
| AMOT | - | - | 933 | |
| PROX1 | - | - | 962 | |
| BMPR2 | - | -1 | 964 | |
| BMP7 | - | - | 987 | |
| HIF1A | - | - | 1008 | |
| HIPK1 | - | - | 1034 | |
| SOX9 | - | -1 | 1045 | |
| RAC1 | - | - | 1087 | |
| DLC1 | - | - | 1105 | |
| MBNL1 | - | - | 1113 | |
| HOXD4 | - | - | 1131 | |
| PTCH1 | - | -1 | 1149 | |
| DLX2 | 0.25 | 1 | 1235 | |
| LRP4 | - | - | 1290 | |
| OTX2 | - | -1 | 1295 | |
| DUSP5 | - | - | 1317 | |
| PCGF2 | - | - | 1393 | |
| MSX2 | - | -1 | 1405 | |
| LMO4 | - | - | 1406 | |
| HDAC2 | - | - | 1413 | |
| CYP26B1 | - | - | 1419 | |
| INSIG1 | - | - | 1440 | |
| PRRX1 | - | - | 1491 | |
| SMAD3 | - | - | 1541 | |
| ZIC2 | - | -1 | 1550 | |
| SPRY2 | - | - | 1552 | |
| PRKAR1A | - | -1 | 1718 | |
| ID2 | - | - | 1719 | |
| LEF1 | - | - | 1731 | |
| TBX5 | - | - | 1743 | |
| FOXA2 | - | - | 1835 | |
| TSC1 | 0.25 | 1 | 1844 | |
| LHX1 | - | - | 1926 | |
| OPA1 | - | - | 1951 | |
| TENM4 | - | - | 1952 | |
| VANGL2 | - | - | 1957 | |
| ENAH | - | - | 1958 | |
| HOXB8 | - | - | 1971 | |
| NKX3-2 | - | - | 2048 | |
| TBX1 | 0.25 | 1 | 2049 | |
| BMPR1A | - | - | 2059 | |
| RBP4 | - | - | 2097 | |
| DUSP1 | - | - | 2140 | |
| SHOX2 | - | - | 2149 | |
| MAP3K7 | - | - | 2169 | |
| BMI1 | - | - | 2175 | |
| NODAL | - | -1 | 2184 | |
| HOXD9 | - | - | 2201 | |
| MYO15A | - | -1 | 2209 | |
| DSCAML1 | - | - | 2267 | |
| HIPK2 | - | - | 2306 | |
| GNAS | - | -1 | 2352 | |
| DLX5 | - | - | 2361 | |
| MAB21L2 | - | - | 2364 | |
| MSX1 | - | -1 | 2365 | |
| RSPO3 | - | - | 2379 | |
| TFAP2A | - | -1 | 2460 | |
| WNT8B | - | - | 2506 | |
| FGFR1 | - | - | 2550 | |
| COL11A1 | 0.25 | 1 | 2558 | |
| CUL3 | 0.5 | 1 | 2576 | |
| T | - | - | 2584 | |
| GRB2 | - | - | 2662 | |
| HOXB5 | - | - | 2669 | |
| SRF | - | - | 2700 | |
| HAND1 | - | - | 2763 | |
| BCR | - | -1 | 2801 | |
| SMAD1 | - | - | 2829 | |
| ALX3 | - | - | 2844 | |
| HOXD10 | - | - | 2845 | |
| WNT5A | - | - | 2870 | |
| WNT6 | - | - | 2891 | |
| DEAF1 | - | - | 2911 | |
| SMAD4 | - | - | 2927 | |
| VAX2 | - | - | 2965 | |
| ALX1 | - | - | 2966 | |
| KLF4 | - | - | 3003 | |
| PAX8 | - | -1 | 3021 | |
| FOXF1 | - | -1 | 3053 | |
| MIB1 | - | - | 3110 | |
| COBL | 0.25 | 1 | 3131 | |
| ITGA8 | - | - | 3151 | |
| ACVR2B | - | -1 | 3179 | |
| FGF3 | - | - | 3192 | |
| GATA3 | - | - | 3207 | |
| WNT1 | - | - | 3263 | |
| FOXE3 | - | -1 | 3264 | |
| EPB41L5 | - | - | 3311 | |
| SOD1 | - | -1 | 3330 | |
| COL2A1 | - | -1 | 3352 | |
| NOTCH1 | - | -1 | 3360 | |
| FOXE1 | - | -1 | 3384 | |
| DLX6 | 0.25 | 1 | 3405 | |
| ALDH1A2 | - | - | 3466 | |
| RSPO2 | - | - | 3476 | |
| CDON | - | - | 3482 | |
| SOX17 | - | - | 3484 | |
| NEUROG1 | 0.25 | 1 | 3515 | |
| MYO7A | - | -1 | 3526 | |
| FZD3 | - | - | 3579 | |
| GBX2 | - | - | 3588 | |
| HOXA13 | - | - | 3602 | |
| ESRRB | 0.25 | 1 | 3688 | |
| HAND2 | - | - | 3736 | |
| HOXA2 | - | - | 3750 | |
| SFRP2 | - | - | 3758 | |
| WNT16 | - | - | 3772 | |
| TLX2 | - | - | 3823 | |
| TBX3 | - | - | 3843 | |
| EXT1 | 0.25 | 1 | 3907 | |
| SP8 | - | - | 3910 | |
| EN1 | - | - | 3999 | |
| TBX15 | - | - | 4012 | |
| HOXA7 | - | - | 4063 | |
| OTX1 | - | - | 4110 | |
| HOXA11 | - | - | 4215 | |
| SKI | - | - | 4231 | |
| DUSP4 | - | - | 4300 | |
| TSHZ1 | - | - | 4351 | |
| FGF10 | - | -1 | 4373 | |
| MECOM | - | - | 4397 | |
| EYA2 | - | - | 4403 | |
| DVL3 | - | - | 4438 | |
| HOXD13 | 0.25 | 1 | 4465 | |
| GDF5 | - | -1 | 4557 | |
| ZEB2 | - | - | 4607 | |
| HOXC4 | - | - | 4616 | |
| SIX4 | - | - | 4623 | |
| RGMA | - | - | 4651 | |
| FGF8 | - | -1 | 4677 | |
| SOX7 | - | - | 4709 | |
| NANOG | - | - | 4730 | |
| IHH | - | -1 | 4742 | |
| SOX8 | - | - | 4770 | |
| NF2 | - | -1 | 4798 | |
| WNT3 | - | - | 4799 | |
| FGF4 | - | - | 4827 | |
| WNT3A | - | - | 4844 | |
| MMP13 | - | -1 | 4872 | |
| HMX2 | - | - | 4879 | |
| OTOP1 | - | - | 4971 | |
| TCF21 | - | - | 5065 | |
| GPC3 | - | -1 | 5153 | |
| BMP4 | - | -1 | 5180 | |
| CER1 | - | - | 5192 | |
| FOXJ1 | - | - | 5202 | |
| VEGFC | - | - | 5203 | |
| HTR2B | - | - | 5233 | |
| HDAC1 | - | - | 5284 | |
| TGFB3 | - | -1 | 5321 | |
| LBX1 | - | - | 5371 | |
| CLIC5 | - | - | 5373 | |
| FOXI1 | - | -1 | 5442 | |
| ALX4 | - | - | 5466 | |
| C2CD3 | - | - | 5468 | |
| NKX2-5 | 0.25 | 1 | 5490 | |
| CELSR1 | - | - | 5539 | |
| HOXD11 | 0.25 | 1 | 5555 | |
| HES1 | 0.25 | 1 | 5662 | |
| HOXB3 | - | - | 5705 | |
| GLI2 | - | -1 | 5731 | |
| IRX2 | - | - | 5779 | |
| NDST1 | - | - | 5799 | |
| HOXA6 | - | - | 5800 | |
| SMO | 0.25 | 1 | 5864 | |
| GAS1 | - | - | 5960 | |
| TBX20 | - | -1 | 6000 | |
| FOXL2 | - | -1 | 6002 | |
| TGFBR1 | - | -1 | 6027 | |
| IPMK | - | - | 6074 | |
| IFT122 | - | -1 | 6114 | |
| GJA5 | - | - | 6124 | |
| TWIST1 | - | -1 | 6128 | |
| GCM1 | - | - | 6140 | |
| POU4F3 | - | -1 | 6147 | |
| MYF5 | - | - | 6153 | |
| OSR1 | - | - | 6192 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| WNT7A | - | - | 6375 | |
| TH | 0.25 | 1 | 6482 | |
| MED1 | - | - | 6574 | |
| SIX2 | - | - | 6713 | |
| MEN1 | - | -1 | 6723 | |
| GRHL3 | - | - | 6732 | |
| TGIF1 | - | -1 | 6785 | |
| GJB6 | - | -1 | 6896 | |
| CRYAA | - | - | 6901 | |
| ESX1 | - | - | 6920 | |
| HOXA5 | - | - | 7014 | |
| WNT8A | - | - | 7061 | |
| HMX3 | - | - | 7138 | |
| SMAD2 | - | - | 7224 | |
| CHST11 | - | - | 7380 | |
| GDF7 | - | - | 7494 | |
| TMIE | - | -1 | 7608 | |
| STRA6 | - | -1 | 7612 | |
| PBX2 | - | - | 7631 | |
| NOG | - | -1 | 7650 | |
| MAFB | - | - | 7672 | |
| WNT7B | - | - | 7693 | |
| TINAG | - | - | 7755 | |
| DUSP2 | - | - | 7903 | |
| GSC | - | - | 8075 | |
| VASP | - | - | 8124 | |
| GJA1 | 0.25 | 1 | 8195 | |
| FOXC2 | - | - | 8308 | |
| PDX1 | - | -1 | 8378 | |
| HS2ST1 | - | - | 8389 | |
| USH1G | - | -1 | 8423 | |
| SNAI1 | - | - | 8474 | |
| WNT9B | - | - | 8495 | |
| IRX3 | - | - | 8539 | |
| RNF2 | - | - | 8552 | |
| TULP3 | - | - | 8569 | |
| KDM2B | - | - | 8663 | |
| PRKACA | - | - | 8797 | |
| TBX4 | - | - | 8883 | |
| HES3 | - | - | 8916 | |
| ACD | - | - | 8986 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| TDGF1P3 | - | - | 9149 | |
| GRSF1 | - | - | 9150 | |
| ATOH1 | - | - | 9258 | |
| SALL4 | - | - | 9465 | |
| GDF3 | - | -1 | 9473 | |
| ATP6V1B1 | - | - | 9514 | |
| BBS5 | - | -1 | 9517 | |
| MIXL1 | - | - | 9542 | |
| FRZB | - | - | 9553 | |
| HNF1B | - | -1 | 9562 | |
| EDN1 | - | - | 9566 | |
| RDH10 | - | - | 9600 | |
| FGF2 | - | - | 9627 | |
| INHBA | - | - | 9731 | |
| TGFBR2 | - | -1 | 9756 | |
| CHRNA10 | - | - | 9844 | |
| SUFU | - | -1 | 9989 | |
| NAT8 | - | - | 10054 | |
| MUSTN1 | - | - | 10227 | |
| CFC1 | - | -1 | 10292 | |
| HOXB7 | - | - | 10514 | |
| DLG1 | - | - | 10557 | |
| BBS4 | - | -1 | 10693 | |
| FUZ | - | - | 10698 | |
| PPAP2B | - | - | 10712 | |
| ADM | - | - | 10761 | |
| AXIN1 | - | -1 | 10905 | |
| ZNF358 | - | - | 10936 | |
| MESP1 | - | - | 10948 | |
| RARG | 0.25 | 1 | 10956 | |
| GNA12 | - | - | 10962 | |
| GATA4 | - | -1 | 11137 | |
| EOMES | - | - | 11394 | |
| TSC2 | 0.25 | 1 | 11448 | |
| NAT8B | - | - | 11702 | |
| WNT5B | - | - | 11732 | |
| FOXH1 | - | - | 11747 | |
| ACVR1 | - | -1 | 11780 | |
| MDFI | - | - | 11799 | |
| DLD | - | -1 | 12236 | |
| DVL2 | - | - | 12293 | |
| FOXP4 | - | - | 12411 | |
| INSIG2 | - | - | 12416 | |
| SP1 | - | - | 12422 | |
| FRS2 | - | - | 12610 | |
| PRKRA | - | - | 12617 | |
| JUP | - | -1 | 12627 | |
| FOXI2 | - | - | 12798 | |
| IFT88 | - | - | 12821 | |
| MKKS | - | -1 | 12900 | |
| TRIM15 | - | - | 13912 | |
| CFC1B | - | - | 13945 | |
| FZD2 | - | - | 13981 | |
| PTPRQ | - | -1 | 14032 | |
| WNT9A | - | - | 14123 | |
| EPHA2 | - | -1 | 14150 | |
| LDB1 | - | - | 14274 | |
| TCAP | - | -1 | 14527 | |
| TWIST2 | - | - | 14594 | |
| TCF7 | - | - | 14920 | |
| HIRA | - | - | 14983 | |
| SIX1 | - | -1 | 15117 | |
| FOXS1 | - | - | 15328 | |
| LMBR1 | - | -1 | 15648 | |
| SOCS3 | - | - | 15768 | |
| ALDH1A3 | - | - | 15783 | |
| SHH | - | -1 | 15942 | |
| SOX18 | - | - | 16286 | |
| WLS | - | - | 16366 | |
| IFT52 | - | - | 16550 | |
| LRP5 | - | -1 | 16985 | |
| FOXI3 | - | - | 17045 | |
| ENG | - | -1 | 17647 | |
| CRABP2 | - | - | 17841 | |
| SP9 | - | - | 18421 | |
| OSR2 | - | - | 18904 | |
| DVL1P1 | - | - | 19166 | |
| LAMA5 | - | - | 19186 | |
| TEAD2 | - | - | 19457 | |
| RPGRIP1L | - | - | 19545 | |
| CYR61 | - | - | 19764 | |
| FZD6 | - | - | 19825 | |
| PSEN1 | - | - | 20241 | |
| GJB5 | - | - | 20339 | |
| ECE1 | - | -1 | 20668 | |
| HESX1 | - | - | 20697 | |
| PTK7 | - | - | 20787 | |
| ARFRP1 | - | - | 20935 | |
| KCNQ4 | - | -1 | 20957 | |
| DVL1 | - | - | 21155 | |
| POU5F1 | - | - | 21422 | |
| PSEN2 | - | - | 21431 | |
| PRKRAP1 | - | - | 21445 | |
| CEP290 | - | -1 | 21573 | |
| TXNRD1 | - | - | 21631 | |
| EFNA1 | - | - | 21813 | |
| WNT4 | - | - | 21840 | |
| RAB23 | - | - | 21919 | |
| UGDH | - | - | 22090 | |
| IFT172 | - | - | 22164 | |
| FBXW4 | - | - | 22341 | |
| SETDB2 | 0.25 | 1 | 22446 | |
| KIF16B | - | - | 22566 | |
| SUPT20H | - | - | 22685 | |
| TGFB1I1 | - | - | 22730 | |
| FOXC1 | - | -1 | 22868 | |
| KAT2A | - | - | 22874 | |
| KIAA1715 | - | - | 22876 | |
| CASP8 | - | -1 | 22936 | |
| PITX1 | 0.25 | 1 | 23078 | |
| NSD1 | 0.25 | 1 | 23293 | |
| PRRX2 | - | - | 23414 | |
| ECSIT | - | - | 23466 | |
| MESP2 | - | -1 | 23558 | |
| TP63 | - | -1 | 24113 | |
| BCL10 | - | -1 | 24165 | |
| BBS7 | - | -1 | 24350 | |
| EXT2 | - | -1 | 24541 | |
| SPINT1 | - | - | 24598 | |
| FLVCR1 | - | - | 24768 | |
| IMPAD1 | - | - | 24769 | |
| LIAS | - | - | 25118 | |
| TWSG1 | - | - | 25171 | |
| NAGLU | - | -1 | 25404 |
GO:0048598
| Name | Description | External IDs |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | Entrez:491  HGNC: 815  Ensembl: ENSG00000157087  HPRD: 00160  |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| PFN1 | profilin 1 | Entrez:5216  Ensembl: ENSG00000108518  HGNC: 8881  HPRD: 01452  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | ||||
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| PFN1 | profilin 1 | ||||
| SATB2 | SATB homeobox 2 | ||||
| SOX2 | SRY (sex determining region Y)-box 2 |
| Query gene | Gene | Gene description | Edge score |
| ATP2B2 | ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| PFN1 | PFN1 | profilin 1 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 |