| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 125 | |
| PAX2 | - | - | 459 | |
| NR4A3 | - | -1 | 594 | |
| CHRD | - | - | 697 | |
| BMPR2 | - | -1 | 964 | |
| BMP7 | - | - | 987 | |
| DUSP5 | - | - | 1317 | |
| SMAD3 | - | - | 1541 | |
| PRKAR1A | - | -1 | 1718 | |
| LEF1 | - | - | 1731 | |
| FOXA2 | - | - | 1835 | |
| LHX1 | - | - | 1926 | |
| BMPR1A | - | - | 2059 | |
| DUSP1 | - | - | 2140 | |
| NODAL | - | -1 | 2184 | |
| SRF | - | - | 2700 | |
| HAND1 | - | - | 2763 | |
| SMAD1 | - | - | 2829 | |
| KLF4 | - | - | 3003 | |
| FOXF1 | - | -1 | 3053 | |
| EPB41L5 | - | - | 3311 | |
| SOX17 | - | - | 3484 | |
| TLX2 | - | - | 3823 | |
| HOXA11 | - | - | 4215 | |
| DUSP4 | - | - | 4300 | |
| EYA2 | - | - | 4403 | |
| SOX7 | - | - | 4709 | |
| NANOG | - | - | 4730 | |
| NF2 | - | -1 | 4798 | |
| WNT3 | - | - | 4799 | |
| WNT3A | - | - | 4844 | |
| BMP4 | - | -1 | 5180 | |
| TBX20 | - | -1 | 6000 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| SIX2 | - | - | 6713 | |
| WNT8A | - | - | 7061 | |
| SMAD2 | - | - | 7224 | |
| DUSP2 | - | - | 7903 | |
| FOXC2 | - | - | 8308 | |
| SNAI1 | - | - | 8474 | |
| PRKACA | - | - | 8797 | |
| TDGF1P3 | - | - | 9149 | |
| MIXL1 | - | - | 9542 | |
| INHBA | - | - | 9731 | |
| AXIN1 | - | -1 | 10905 | |
| MESP1 | - | - | 10948 | |
| EOMES | - | - | 11394 | |
| ACVR1 | - | -1 | 11780 | |
| TRIM15 | - | - | 13912 | |
| EPHA2 | - | -1 | 14150 | |
| FOXS1 | - | - | 15328 | |
| WLS | - | - | 16366 | |
| POU5F1 | - | - | 21422 | |
| TXNRD1 | - | - | 21631 | |
| KIF16B | - | - | 22566 | |
| FOXC1 | - | -1 | 22868 | |
| ECSIT | - | - | 23466 | |
| MESP2 | - | -1 | 23558 | |
| EXT2 | - | -1 | 24541 | |
| TWSG1 | - | - | 25171 |
GO:0001704
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657 HGNC: 11195 HPRD: 08921 Ensembl: ENSG00000181449 |
| PAX2 | paired box 2 | Entrez:5076 HGNC: 8616 Ensembl: ENSG00000075891 HPRD: 01330 |
| NR4A3 | nuclear receptor subfamily 4, group A, member 3 | Entrez:8013 Ensembl: ENSG00000119508 HGNC: 7982 HPRD: 02766 |
| CHRD | chordin | Entrez:8646 Ensembl: ENSG00000090539 HGNC: 1949 HPRD: 04592 |
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) | Entrez:659 Ensembl: ENSG00000204217 HPRD: 02880 HGNC: 1078 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| PAX2 | paired box 2 | ||||
| NR4A3 | nuclear receptor subfamily 4, group A, member 3 | ||||
| CHRD | chordin | ||||
| BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| PAX2 | PAX2 | paired box 2 | |
| NR4A3 | NR4A3 | nuclear receptor subfamily 4, group A, member 3 | |
| CHRD | CHRD | chordin | |
| BMPR2 | BMPR2 | bone morphogenetic protein receptor, type II (serine/threonine kinase) |