| Gene | Input weight | Standard | Rank | |
| SFRP1 | - | - | 204 | |
| PAX6 | 0.25 | 1 | 355 | |
| LHX2 | - | - | 362 | |
| FOXG1 | - | - | 483 | |
| APC | 0.25 | 1 | 528 | |
| CHRD | - | - | 697 | |
| NKX2-2 | - | - | 771 | |
| LRP6 | - | - | 778 | |
| WNT2B | - | - | 1126 | |
| PTCH1 | - | -1 | 1149 | |
| LRP4 | - | - | 1290 | |
| CXXC4 | - | - | 1472 | |
| WNT2 | 0.25 | 1 | 1783 | |
| FOXA2 | - | - | 1835 | |
| DUSP6 | - | - | 1889 | |
| LHX1 | - | - | 1926 | |
| PAX7 | - | -1 | 2033 | |
| BMPR1A | - | - | 2059 | |
| SMAD6 | - | - | 2079 | |
| DSCAML1 | - | - | 2267 | |
| BMPR1B | - | -1 | 2397 | |
| HHIP | - | - | 2403 | |
| NKX2-1 | - | - | 2488 | |
| WNT8B | - | - | 2506 | |
| WNT5A | - | - | 2870 | |
| VAX2 | - | - | 2965 | |
| NKX6-1 | - | - | 3174 | |
| LMX1B | 0.25 | 1 | 3653 | |
| HOXA2 | - | - | 3750 | |
| SP8 | - | - | 3910 | |
| EN1 | - | - | 3999 | |
| HOXA11 | - | - | 4215 | |
| WNT3 | - | - | 4799 | |
| WNT3A | - | - | 4844 | |
| BMP4 | - | -1 | 5180 | |
| NKX6-2 | - | - | 5422 | |
| HOXD11 | 0.25 | 1 | 5555 | |
| GLI2 | - | -1 | 5731 | |
| SMO | 0.25 | 1 | 5864 | |
| AXIN2 | - | -1 | 5927 | |
| MNX1 | - | - | 5932 | |
| GAS1 | - | - | 5960 | |
| TBX20 | - | -1 | 6000 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| GSX2 | - | - | 6242 | |
| WNT7A | - | - | 6375 | |
| TGIF1 | - | -1 | 6785 | |
| WNT8A | - | - | 7061 | |
| SMAD2 | - | - | 7224 | |
| NOG | - | -1 | 7650 | |
| GSC | - | - | 8075 | |
| TULP3 | - | - | 8569 | |
| GLI3 | - | -1 | 9032 | |
| EDN1 | - | - | 9566 | |
| SUFU | - | -1 | 9989 | |
| AXIN1 | - | -1 | 10905 | |
| WNT5B | - | - | 11732 | |
| MDFI | - | - | 11799 | |
| EVX1 | - | - | 12405 | |
| IFT88 | - | - | 12821 | |
| FBXL15 | - | - | 14570 | |
| NOTO | - | - | 14851 | |
| SHH | - | -1 | 15942 | |
| IFT52 | - | - | 16550 | |
| LRP5 | - | -1 | 16985 | |
| HOXB2 | - | - | 20191 | |
| PSEN1 | - | - | 20241 | |
| PSEN2 | - | - | 21431 | |
| FZD5 | - | - | 21891 | |
| RAB23 | - | - | 21919 | |
| IFT172 | - | - | 22164 | |
| DISP1 | - | - | 23291 | |
| SENP2 | - | - | 23540 | |
| LRP5L | - | - | 23965 | |
| AIDA | - | - | 25079 |
GO:0009953
| Name | Description | External IDs |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| PAX6 | paired box 6 | Entrez:5080  HPRD: 06167  Ensembl: ENSG00000007372  HGNC: 8620  |
| LHX2 | LIM homeobox 2 | Entrez:9355  HPRD: 04786  HGNC: 6594  Ensembl: ENSG00000106689  |
| FOXG1 | forkhead box G1 | Entrez:2290  HGNC: 3811  Ensembl: ENSG00000176165  HPRD: 01283  |
| APC | adenomatous polyposis coli | Entrez:324  HGNC: 583  HPRD: 01439  Ensembl: ENSG00000134982  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SFRP1 | secreted frizzled-related protein 1 | ||||
| PAX6 | paired box 6 | ||||
| LHX2 | LIM homeobox 2 | ||||
| FOXG1 | forkhead box G1 | ||||
| APC | adenomatous polyposis coli |
| Query gene | Gene | Gene description | Edge score |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| PAX6 | PAX6 | paired box 6 | |
| LHX2 | LHX2 | LIM homeobox 2 | |
| FOXG1 | FOXG1 | forkhead box G1 | |
| APC | APC | adenomatous polyposis coli |