| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 125 | |
| SFRP1 | - | - | 204 | |
| APC | 0.25 | 1 | 528 | |
| SOX4 | - | - | 581 | |
| NR2E1 | 0.25 | 1 | 699 | |
| SOX9 | - | -1 | 1045 | |
| LDB2 | - | - | 1061 | |
| FGFR3 | - | -1 | 1648 | |
| VANGL2 | - | - | 1957 | |
| IGF1 | 0.25 | 1 | 1993 | |
| CDX2 | - | - | 2595 | |
| ZHX2 | - | - | 2748 | |
| KLF10 | - | - | 3421 | |
| SKI | - | - | 4231 | |
| FGF10 | - | -1 | 4373 | |
| NANOG | - | - | 4730 | |
| HES1 | 0.25 | 1 | 5662 | |
| WNT7A | - | - | 6375 | |
| NOG | - | -1 | 7650 | |
| ASCL2 | - | - | 8695 | |
| TCF7L1 | - | - | 13850 | |
| LDB1 | - | - | 14274 | |
| VPS72 | - | - | 14399 | |
| LIG4 | - | -1 | 15324 | |
| POU5F1 | - | - | 21422 | |
| YAP1 | - | - | 22816 |
GO:0035019
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| APC | adenomatous polyposis coli | Entrez:324  HGNC: 583  HPRD: 01439  Ensembl: ENSG00000134982  |
| SOX4 | SRY (sex determining region Y)-box 4 | Entrez:6659  HPRD: 01695  HGNC: 11200  Ensembl: ENSG00000124766  |
| NR2E1 | nuclear receptor subfamily 2, group E, member 1 | Entrez:7101  Ensembl: ENSG00000112333  HGNC: 7973  HPRD: 07230  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| APC | adenomatous polyposis coli | ||||
| SOX4 | SRY (sex determining region Y)-box 4 | ||||
| NR2E1 | nuclear receptor subfamily 2, group E, member 1 |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| APC | APC | adenomatous polyposis coli | |
| SOX4 | SOX4 | SRY (sex determining region Y)-box 4 | |
| NR2E1 | NR2E1 | nuclear receptor subfamily 2, group E, member 1 |