| Gene | Input weight | Standard | Rank | |
| ATP2B2 | 0.5 | 1 | 1 | |
| GNAO1 | - | - | 3 | |
| AFF2 | 0.25 | 1 | 13 | |
| SHANK2 | 1.0 | 1 | 22 | |
| ATRX | - | -1 | 24 | |
| SLIT1 | - | - | 33 | |
| GRIN2A | 0.25 | 1 | 56 | |
| PLCB1 | - | -1 | 61 | |
| ERBB4 | 0.25 | 1 | 64 | |
| NEUROD2 | - | - | 68 | |
| SLC1A2 | - | - | 71 | |
| LPHN1 | - | - | 81 | |
| SOX2 | - | -1 | 125 | |
| CNTNAP2 | 1.0 | 1 | 134 | |
| NEUROD1 | - | -1 | 136 | |
| GABRA5 | 0.25 | 1 | 157 | |
| FGFR2 | - | -1 | 165 | |
| GRIN1 | - | - | 167 | |
| SYNJ1 | - | - | 178 | |
| SSTR2 | - | - | 185 | |
| TBR1 | 0.5 | 1 | 193 | |
| SFRP1 | - | - | 204 | |
| PAFAH1B1 | 0.25 | 1 | 208 | |
| ABR | - | - | 211 | |
| RORB | - | - | 225 | |
| ASCL1 | - | - | 229 | |
| CACNA1A | - | -1 | 231 | |
| SLC8A2 | - | - | 232 | |
| PLXNA2 | - | - | 235 | |
| ATP6V0D1 | - | - | 258 | |
| BPTF | - | - | 270 | |
| NFIB | - | - | 271 | |
| UNC5C | - | - | 307 | |
| RARB | 0.25 | 1 | 325 | |
| NF1 | 0.25 | 1 | 333 | |
| PAX6 | 0.25 | 1 | 355 | |
| CA10 | - | - | 359 | |
| LHX2 | - | - | 362 | |
| NNAT | - | - | 382 | |
| NEUROD6 | - | - | 385 | |
| MYO16 | 0.25 | 1 | 386 | |
| TOP2B | - | - | 389 | |
| MYH10 | - | - | 403 | |
| CDK5R1 | - | - | 406 | |
| SALL1 | - | - | 408 | |
| RELN | 0.5 | 1 | 436 | |
| CNTN2 | - | - | 438 | |
| NPY | 0.25 | 1 | 456 | |
| PAX2 | - | - | 459 | |
| NR3C1 | - | - | 463 | |
| HPRT1 | - | -1 | 481 | |
| FOXG1 | - | - | 483 | |
| GNAQ | - | - | 490 | |
| NIPBL | - | -1 | 561 | |
| FABP7 | 0.25 | 1 | 563 | |
| SLIT2 | - | - | 582 | |
| NR4A3 | - | -1 | 594 | |
| GRIN2B | 1.0 | 1 | 599 | |
| PCSK1 | - | - | 604 | |
| IGF1R | - | - | 631 | |
| POU3F2 | - | - | 653 | |
| CTNNA2 | - | - | 654 | |
| DRD1 | 0.25 | 1 | 662 | |
| CHRD | - | - | 697 | |
| NR2E1 | 0.25 | 1 | 699 | |
| FEZF2 | 0.25 | 1 | 712 | |
| NR4A2 | 0.25 | 1 | 713 | |
| LRP2 | 0.25 | 1 | 745 | |
| SMARCA4 | - | - | 751 | |
| SHROOM2 | - | - | 763 | |
| NKX2-2 | - | - | 771 | |
| YWHAE | - | - | 772 | |
| ZIC1 | - | - | 774 | |
| LRP6 | - | - | 778 | |
| KCNK3 | - | - | 792 | |
| DICER1 | - | -1 | 834 | |
| VLDLR | 0.25 | 1 | 837 | |
| PGAP1 | - | - | 865 | |
| UBE3A | 0.25 | 1 | 917 | |
| RFX4 | - | - | 924 | |
| PROX1 | - | - | 962 | |
| BMPR2 | - | -1 | 964 | |
| SYNJ2 | - | - | 988 | |
| CREB1 | - | - | 991 | |
| SEPT4 | - | - | 1015 | |
| WNT10B | - | - | 1030 | |
| RAC1 | - | - | 1087 | |
| PRKG1 | - | - | 1091 | |
| DLC1 | - | - | 1105 | |
| WNT2B | - | - | 1126 | |
| BCL11B | - | - | 1127 | |
| GDF10 | - | - | 1138 | |
| PTCH1 | - | -1 | 1149 | |
| NCOA2 | - | - | 1159 | |
| ID4 | - | - | 1171 | |
| BCAN | - | - | 1186 | |
| NDEL1 | 0.25 | 1 | 1194 | |
| EN2 | 0.25 | 1 | 1204 | |
| NR2F1 | - | - | 1220 | |
| ROBO2 | - | -1 | 1224 | |
| DLX2 | 0.25 | 1 | 1235 | |
| SMARCA1 | - | - | 1236 | |
| FYN | - | - | 1284 | |
| OTX2 | - | -1 | 1295 | |
| PHOX2B | - | - | 1326 | |
| SLC8A1 | - | - | 1339 | |
| NCOA6 | - | - | 1361 | |
| HDAC2 | - | - | 1413 | |
| AGTR2 | 0.25 | 1 | 1418 | |
| BAG6 | - | - | 1435 | |
| ISL1 | - | - | 1441 | |
| HTR5A | 0.25 | 1 | 1507 | |
| AKAP5 | - | - | 1517 | |
| ULK1 | - | - | 1530 | |
| ZIC2 | - | -1 | 1550 | |
| SALL3 | - | - | 1561 | |
| GSK3B | - | - | 1592 | |
| IRS2 | - | -1 | 1607 | |
| FGFR3 | - | -1 | 1648 | |
| TYRO3 | - | - | 1663 | |
| FZD4 | - | -1 | 1666 | |
| NR0B1 | - | -1 | 1715 | |
| ID2 | - | - | 1719 | |
| LEF1 | - | - | 1731 | |
| PCSK1N | - | - | 1738 | |
| SIX3 | - | -1 | 1742 | |
| RTN4 | - | - | 1776 | |
| MAP1S | - | - | 1777 | |
| NCOR1 | - | - | 1807 | |
| EMX1 | - | - | 1823 | |
| FOXA2 | - | - | 1835 | |
| TSC1 | 0.25 | 1 | 1844 | |
| CITED1 | - | - | 1867 | |
| ROBO1 | - | - | 1888 | |
| LHX1 | - | - | 1926 | |
| APP | - | - | 1991 | |
| HAP1 | - | - | 2028 | |
| CNTN4 | 1.0 | 1 | 2038 | |
| SOX3 | - | - | 2042 | |
| BMPR1A | - | - | 2059 | |
| DRD2 | 0.25 | 1 | 2071 | |
| DPYSL2 | - | - | 2131 | |
| BMI1 | - | - | 2175 | |
| POU6F1 | - | - | 2177 | |
| NODAL | - | -1 | 2184 | |
| LRP8 | - | - | 2215 | |
| SRC | - | - | 2241 | |
| DSCAML1 | - | - | 2267 | |
| NTF3 | 0.25 | 1 | 2294 | |
| GHRHR | - | - | 2312 | |
| MDGA1 | - | - | 2315 | |
| MTPN | - | - | 2328 | |
| NEUROG2 | - | - | 2345 | |
| MSX1 | - | -1 | 2365 | |
| DLX1 | 0.25 | 1 | 2366 | |
| PCDH18 | - | - | 2461 | |
| NKX2-1 | - | - | 2488 | |
| MAPK8IP3 | - | - | 2496 | |
| WNT8B | - | - | 2506 | |
| FGFR1 | - | - | 2550 | |
| NLGN4X | 1.0 | 1 | 2551 | |
| FZD10 | - | - | 2606 | |
| LHX5 | - | - | 2646 | |
| ZEB1 | - | -1 | 2672 | |
| GATA2 | - | -1 | 2710 | |
| FZD7 | - | - | 2714 | |
| BCL2 | 0.25 | 1 | 2759 | |
| TNR | - | - | 2784 | |
| BCR | - | -1 | 2801 | |
| SLC6A11 | - | - | 2809 | |
| EGFR | - | -1 | 2811 | |
| SMAD1 | - | - | 2829 | |
| WNT5A | - | - | 2870 | |
| PITPNM1 | - | - | 2879 | |
| SERPINE2 | - | - | 2896 | |
| ALX1 | - | - | 2966 | |
| GSX1 | - | - | 2967 | |
| LHX6 | - | - | 2989 | |
| FZD8 | - | - | 3018 | |
| LHX8 | - | - | 3040 | |
| HCN2 | - | - | 3076 | |
| CDK5 | 0.25 | 1 | 3113 | |
| AVPR1A | 0.5 | 1 | 3141 | |
| CYP17A1 | 0.25 | 1 | 3171 | |
| WNT1 | - | - | 3263 | |
| PHF8 | 0.25 | 1 | 3268 | |
| SBK1 | - | - | 3297 | |
| MAS1 | - | - | 3300 | |
| CYP19A1 | 0.25 | 1 | 3314 | |
| SLC6A4 | 0.25 | 1 | 3328 | |
| NOTCH1 | - | -1 | 3360 | |
| CTTNBP2 | - | - | 3398 | |
| RAX | - | -1 | 3411 | |
| AGTPBP1 | - | - | 3437 | |
| ALDH1A2 | - | - | 3466 | |
| CDON | - | - | 3482 | |
| SFRP4 | - | - | 3511 | |
| PTPRS | - | - | 3537 | |
| PCM1 | - | -1 | 3562 | |
| FZD3 | - | - | 3579 | |
| GBX2 | - | - | 3588 | |
| MET | 1.0 | 1 | 3618 | |
| SLC8A3 | - | - | 3637 | |
| LMX1B | 0.25 | 1 | 3653 | |
| BMP2 | - | -1 | 3686 | |
| SRD5A1 | 0.25 | 1 | 3730 | |
| HOXA2 | - | - | 3750 | |
| SFRP2 | - | - | 3758 | |
| OGDH | - | - | 3773 | |
| GPR56 | - | - | 3777 | |
| OXCT1 | - | - | 3898 | |
| EXT1 | 0.25 | 1 | 3907 | |
| KNDC1 | - | - | 3908 | |
| EN1 | - | - | 3999 | |
| HES5 | - | - | 4001 | |
| EGR2 | 0.25 | 1 | 4059 | |
| CBS | 0.25 | 1 | 4080 | |
| OTX1 | - | - | 4110 | |
| FOXL1 | - | - | 4171 | |
| ACSL3 | - | - | 4184 | |
| FOXB1 | - | - | 4202 | |
| FOXP2 | 0.5 | 1 | 4225 | |
| SKI | - | - | 4231 | |
| SMAD9 | - | -1 | 4245 | |
| FGF10 | - | -1 | 4373 | |
| MECOM | - | - | 4397 | |
| BARHL1 | - | - | 4409 | |
| DIXDC1 | - | - | 4469 | |
| P2RY1 | - | - | 4483 | |
| OXTR | 0.5 | 1 | 4494 | |
| OTP | - | - | 4497 | |
| AVPR2 | - | -1 | 4537 | |
| DRAXIN | - | - | 4545 | |
| PHOX2A | - | - | 4551 | |
| CYP11A1 | 0.25 | 1 | 4559 | |
| GHRH | - | - | 4568 | |
| ZEB2 | - | - | 4607 | |
| NR2F2 | - | - | 4609 | |
| FZD9 | - | - | 4674 | |
| CST3 | - | -1 | 4680 | |
| WNT3 | - | - | 4799 | |
| SLC7A11 | - | - | 4816 | |
| WNT3A | - | - | 4844 | |
| HMX2 | - | - | 4879 | |
| EFNA5 | - | - | 4967 | |
| BMP4 | - | -1 | 5180 | |
| PLXNA4 | - | - | 5187 | |
| ETS1 | - | - | 5230 | |
| SLC6A3 | 0.25 | 1 | 5276 | |
| CKB | - | - | 5388 | |
| C2CD3 | - | - | 5468 | |
| ATP7A | - | -1 | 5491 | |
| LMX1A | - | - | 5502 | |
| HES1 | 0.25 | 1 | 5662 | |
| GLI2 | - | -1 | 5731 | |
| NDST1 | - | - | 5799 | |
| SMO | 0.25 | 1 | 5864 | |
| GAS1 | - | - | 5960 | |
| SHROOM4 | - | - | 6086 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| GSX2 | - | - | 6242 | |
| FOXP3 | - | -1 | 6270 | |
| RORA | - | - | 6355 | |
| WNT7A | - | - | 6375 | |
| HMGCS1 | - | - | 6431 | |
| PRTFDC1 | - | - | 6437 | |
| TH | 0.25 | 1 | 6482 | |
| MED1 | - | - | 6574 | |
| PTF1A | - | - | 6703 | |
| MEN1 | - | -1 | 6723 | |
| ECE2 | - | - | 6886 | |
| DKK1 | - | - | 6892 | |
| SDF4 | - | - | 6949 | |
| SPHK2 | - | - | 6952 | |
| VAX1 | - | - | 6999 | |
| WNT8A | - | - | 7061 | |
| HMX3 | - | - | 7138 | |
| CXCL12 | - | - | 7204 | |
| GDF7 | - | - | 7494 | |
| TSPAN2 | - | - | 7590 | |
| CCKAR | - | - | 7616 | |
| NOG | - | -1 | 7650 | |
| MAFB | - | - | 7672 | |
| WNT7B | - | - | 7693 | |
| HSD17B3 | 0.25 | 1 | 7714 | |
| ARF4 | - | - | 7739 | |
| KLHL17 | - | - | 7868 | |
| CX3CR1 | - | - | 7884 | |
| GSC | - | - | 8075 | |
| NUMBL | - | - | 8142 | |
| AHSG | - | - | 8418 | |
| PEX5 | - | -1 | 8514 | |
| JHDM1D | - | - | 8559 | |
| TULP3 | - | - | 8569 | |
| KDM2B | - | - | 8663 | |
| UQCRQ | - | - | 8688 | |
| DMBX1 | - | - | 8760 | |
| HES3 | - | - | 8916 | |
| GLI3 | - | -1 | 9032 | |
| ATOH1 | - | - | 9258 | |
| TAL2 | - | - | 9456 | |
| FRZB | - | - | 9553 | |
| HNF1B | - | -1 | 9562 | |
| FOXA3 | - | - | 9582 | |
| FGF2 | - | - | 9627 | |
| BOK | - | - | 9727 | |
| TGFBR2 | - | -1 | 9756 | |
| DUOX2 | - | -1 | 9797 | |
| SFRP5 | - | - | 9913 | |
| NUMB | - | - | 9921 | |
| HOOK3 | - | - | 10195 | |
| PPT1 | - | -1 | 10364 | |
| ATM | - | -1 | 10590 | |
| BBS4 | - | -1 | 10693 | |
| HMGCS2 | - | - | 10713 | |
| AXIN1 | - | -1 | 10905 | |
| INPPL1 | - | - | 11037 | |
| PEBP1 | - | - | 11226 | |
| HOXB1 | 0.25 | 1 | 11233 | |
| NES | - | - | 11295 | |
| EOMES | - | - | 11394 | |
| FEZF1 | 0.25 | 1 | 11491 | |
| PYGO2 | - | - | 11582 | |
| PHGDH | - | -1 | 11898 | |
| GNG12 | - | - | 11929 | |
| SSTR3 | - | - | 12043 | |
| SLC23A1 | - | - | 12154 | |
| DVL2 | - | - | 12293 | |
| FRS2 | - | - | 12610 | |
| RYK | - | - | 12768 | |
| PITX3 | 0.25 | 1 | 12815 | |
| IFT88 | - | - | 12821 | |
| MKKS | - | -1 | 12900 | |
| CASP2 | - | - | 12965 | |
| HNMT | - | - | 13018 | |
| TACC3 | - | - | 13022 | |
| LRRK2 | - | -1 | 13335 | |
| E2F1 | - | - | 13572 | |
| HSPA5 | - | - | 13639 | |
| FZD2 | - | - | 13981 | |
| VCX3A | - | - | 13998 | |
| BID | - | - | 14222 | |
| LDB1 | - | - | 14274 | |
| BBS2 | - | -1 | 14317 | |
| TBX19 | - | - | 14813 | |
| BAK1 | - | - | 15240 | |
| ALDH1A3 | - | - | 15783 | |
| SHH | - | -1 | 15942 | |
| TP73 | - | - | 15964 | |
| KDM1A | - | - | 15967 | |
| FOXB2 | - | - | 16566 | |
| C1QB | - | - | 16785 | |
| COX1 | - | - | 16955 | |
| COX17 | - | - | 17411 | |
| CEP120 | - | - | 18769 | |
| RPGRIP1L | - | - | 19545 | |
| UTP3 | - | - | 19792 | |
| FZD6 | - | - | 19825 | |
| LUZP6 | - | - | 19879 | |
| HOXB2 | - | - | 20191 | |
| PSEN1 | - | - | 20241 | |
| CHRNB2 | 0.25 | 1 | 20277 | |
| ND4 | - | - | 20301 | |
| EFNA2 | - | - | 20349 | |
| MNAT1 | - | - | 20484 | |
| HESX1 | - | - | 20697 | |
| ANXA3 | - | - | 20797 | |
| NDUFS4 | - | -1 | 21018 | |
| AQP1 | - | - | 21019 | |
| SRR | - | - | 21028 | |
| NKX2-6 | - | -1 | 21164 | |
| EPOR | - | - | 21230 | |
| ARX | 0.25 | 1 | 21412 | |
| PSEN2 | - | - | 21431 | |
| SPHK1 | - | - | 21548 | |
| CEP290 | - | -1 | 21573 | |
| PAFAH1B2 | - | - | 21629 | |
| AXL | - | - | 21695 | |
| WNT4 | - | - | 21840 | |
| FZD5 | - | - | 21891 | |
| FZD1 | - | - | 22086 | |
| RAB3GAP1 | - | - | 22229 | |
| MDK | - | - | 22267 | |
| AARS | - | - | 22308 | |
| CD9 | - | - | 22311 | |
| CCNG1 | - | - | 22384 | |
| NOTCH3 | - | - | 22751 | |
| WDR62 | - | - | 22764 | |
| AGER | - | - | 22826 | |
| FOXC1 | - | -1 | 22868 | |
| KAT2A | - | - | 22874 | |
| PITX1 | 0.25 | 1 | 23078 | |
| HTRA2 | - | -1 | 23310 | |
| BAG3 | - | - | 23357 | |
| CDH1 | - | -1 | 23441 | |
| BDH1 | - | - | 23717 | |
| UCHL5 | - | - | 23734 | |
| ATG7 | - | - | 23783 | |
| CTNS | - | -1 | 23831 | |
| SHARPIN | - | - | 23940 | |
| BRCA1 | - | -1 | 24158 | |
| GNPAT | - | -1 | 24183 | |
| CDK5RAP2 | - | -1 | 24345 | |
| CDK5RAP1 | - | - | 24534 | |
| PEX13 | - | -1 | 24706 | |
| TWSG1 | - | - | 25171 | |
| NAGLU | - | -1 | 25404 | |
| ASPM | - | -1 | 25468 | |
| CDK5RAP3 | - | - | 25488 | |
| ACAT1 | - | -1 | 25660 | |
| CLN5 | - | -1 | 25787 |
GO:0007420
| Name | Description | External IDs |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | Entrez:491  HGNC: 815  Ensembl: ENSG00000157087  HPRD: 00160  |
| GNAO1 | guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O | Entrez:2775  HPRD: 00757  HGNC: 4389  Ensembl: ENSG00000087258  |
| AFF2 | AF4/FMR2 family, member 2 | Entrez:2334  HGNC: 3776  HPRD: 02397  Ensembl: ENSG00000155966  |
| SHANK2 | SH3 and multiple ankyrin repeat domains 2 | Entrez:22941  HGNC: 14295  HPRD: 04479  Ensembl: ENSG00000162105  |
| ATRX | alpha thalassemia/mental retardation syndrome X-linked | Entrez:546  HGNC: 886  HPRD: 02069  Ensembl: ENSG00000085224  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | ||||
| GNAO1 | guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O | ||||
| AFF2 | AF4/FMR2 family, member 2 | ||||
| SHANK2 | SH3 and multiple ankyrin repeat domains 2 | ||||
| ATRX | alpha thalassemia/mental retardation syndrome X-linked |
| Query gene | Gene | Gene description | Edge score |
| ATP2B2 | ATP2B2 | ATPase, Ca++ transporting, plasma membrane 2 | |
| GNAO1 | GNAO1 | guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O | |
| AFF2 | AFF2 | AF4/FMR2 family, member 2 | |
| SHANK2 | SHANK2 | SH3 and multiple ankyrin repeat domains 2 | |
| ATRX | ATRX | alpha thalassemia/mental retardation syndrome X-linked |