| Gene | Input weight | Standard | Rank | |
| SATB2 | 0.25 | 1 | 108 | |
| RUNX2 | - | -1 | 209 | |
| FGF9 | - | - | 241 | |
| MEF2C | 0.25 | 1 | 248 | |
| NFIB | - | - | 271 | |
| RARB | 0.25 | 1 | 325 | |
| MYCN | - | - | 419 | |
| COL9A1 | - | - | 768 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| BMP7 | - | - | 987 | |
| HIF1A | - | - | 1008 | |
| WNT10B | - | - | 1030 | |
| SOX9 | - | -1 | 1045 | |
| WNT2B | - | - | 1126 | |
| DLX2 | 0.25 | 1 | 1235 | |
| PRRX1 | - | - | 1491 | |
| FGFR3 | - | -1 | 1648 | |
| LECT1 | - | - | 1837 | |
| SOX6 | - | - | 1939 | |
| PAX7 | - | -1 | 2033 | |
| BMPR1A | - | - | 2059 | |
| SHOX2 | - | - | 2149 | |
| FOXD3 | - | - | 2272 | |
| GNAS | - | -1 | 2352 | |
| BMPR1B | - | -1 | 2397 | |
| FGFR1 | - | - | 2550 | |
| COL11A1 | 0.25 | 1 | 2558 | |
| AMELX | - | -1 | 2925 | |
| ALX1 | - | - | 2966 | |
| BMP6 | - | - | 3242 | |
| COL2A1 | - | -1 | 3352 | |
| RSPO2 | - | - | 3476 | |
| SFRP2 | - | - | 3758 | |
| ZBTB16 | - | - | 3976 | |
| BMP5 | - | - | 4051 | |
| CBS | 0.25 | 1 | 4080 | |
| BMP3 | - | - | 4142 | |
| FOXL1 | - | - | 4171 | |
| HOXA11 | - | - | 4215 | |
| BMP8A | - | - | 4315 | |
| GDF5 | - | -1 | 4557 | |
| HOXC4 | - | - | 4616 | |
| MAPK14 | - | - | 4729 | |
| FGF18 | - | - | 4736 | |
| IHH | - | -1 | 4742 | |
| FGF4 | - | - | 4827 | |
| MMP13 | - | -1 | 4872 | |
| FOXD1 | - | - | 5256 | |
| ATP7A | - | -1 | 5491 | |
| FOXD2 | - | - | 5493 | |
| HOXD11 | 0.25 | 1 | 5555 | |
| AXIN2 | - | -1 | 5927 | |
| RARA | 0.25 | 1 | 6024 | |
| OTOR | - | - | 6057 | |
| MEF2A | - | - | 6060 | |
| MAPK3 | 0.25 | 1 | 6096 | |
| BARX2 | - | - | 6105 | |
| MYF5 | - | - | 6153 | |
| OSR1 | - | - | 6192 | |
| SIX2 | - | - | 6713 | |
| HOXA5 | - | - | 7014 | |
| FOXD4L1 | - | - | 7290 | |
| CHST11 | - | - | 7380 | |
| NPPC | - | - | 7442 | |
| CHRDL2 | - | - | 7648 | |
| WNT7B | - | - | 7693 | |
| BMP8B | - | - | 7971 | |
| IL17F | - | - | 8673 | |
| GHRL | 0.25 | 1 | 9333 | |
| EDN1 | - | - | 9566 | |
| FGF2 | - | - | 9627 | |
| FOXD4 | - | - | 9835 | |
| GHR | - | -1 | 10058 | |
| FOXD4L4 | - | - | 10472 | |
| FGF6 | - | - | 10907 | |
| RARG | 0.25 | 1 | 10956 | |
| EVC | - | -1 | 11125 | |
| WNT5B | - | - | 11732 | |
| GDF2 | - | - | 11942 | |
| TGFBI | - | - | 13688 | |
| UNCX | - | - | 13746 | |
| TGFB1 | 0.25 | 1 | 14736 | |
| FOXD4L5 | - | - | 16935 | |
| FOXD4L2 | - | - | 17995 | |
| OSR2 | - | - | 18904 | |
| FOXD4L6 | - | - | 19463 | |
| CYR61 | - | - | 19764 | |
| COL11A2 | - | -1 | 20316 | |
| EIF2AK3 | - | - | 20407 | |
| CREB3L2 | - | - | 20825 | |
| ESRRA | - | - | 22220 | |
| FBXW4 | - | - | 22341 | |
| MGP | - | - | 22959 | |
| PITX1 | 0.25 | 1 | 23078 | |
| TYMS | - | - | 23100 | |
| PRRX2 | - | - | 23414 | |
| LUM | - | - | 24067 | |
| THBS3 | - | - | 24201 | |
| COL1A1 | - | -1 | 24560 | |
| IMPAD1 | - | - | 24769 | |
| BMP1 | - | - | 25016 |
GO:0051216
| Name | Description | External IDs |
| SATB2 | SATB homeobox 2 | Entrez:23314 Ensembl: ENSG00000119042 HPRD: 12178 HGNC: 21637 |
| RUNX2 | runt-related transcription factor 2 | Entrez:860 Ensembl: ENSG00000124813 HGNC: 10472 HPRD: 02566 |
| FGF9 | fibroblast growth factor 9 | Entrez:2254 HPRD: 02951 HGNC: 3687 Ensembl: ENSG00000102678 |
| MEF2C | myocyte enhancer factor 2C | Entrez:4208 HGNC: 6996 Ensembl: ENSG00000081189 HPRD: 02809 |
| NFIB | nuclear factor I/B | Entrez:4781 HGNC: 7785 Ensembl: ENSG00000147862 HPRD: 09008 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SATB2 | SATB homeobox 2 | ||||
| RUNX2 | runt-related transcription factor 2 | ||||
| FGF9 | fibroblast growth factor 9 | ||||
| MEF2C | myocyte enhancer factor 2C | ||||
| NFIB | nuclear factor I/B |
| Query gene | Gene | Gene description | Edge score |
| SATB2 | SATB2 | SATB homeobox 2 | |
| RUNX2 | RUNX2 | runt-related transcription factor 2 | |
| FGF9 | FGF9 | fibroblast growth factor 9 | |
| MEF2C | MEF2C | myocyte enhancer factor 2C | |
| NFIB | NFIB | nuclear factor I/B |