| Gene | Input weight | Standard | Rank | |
| SOX11 | - | - | 66 | |
| SATB2 | 0.25 | 1 | 108 | |
| FGFR2 | - | -1 | 165 | |
| SFRP1 | - | - | 204 | |
| RUNX2 | - | -1 | 209 | |
| PDGFRA | - | -1 | 233 | |
| MEF2C | 0.25 | 1 | 248 | |
| RARB | 0.25 | 1 | 325 | |
| MYCN | - | - | 419 | |
| NIPBL | - | -1 | 561 | |
| SCHIP1 | - | - | 738 | |
| NAB1 | - | - | 765 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| BMP7 | - | - | 987 | |
| WNT10B | - | - | 1030 | |
| SOX9 | - | -1 | 1045 | |
| HOXD4 | - | - | 1131 | |
| DLX2 | 0.25 | 1 | 1235 | |
| PTHLH | - | -1 | 1269 | |
| PCGF2 | - | - | 1393 | |
| MSX2 | - | -1 | 1405 | |
| FBN2 | - | - | 1425 | |
| INSIG1 | - | - | 1440 | |
| PRRX1 | - | - | 1491 | |
| SMAD3 | - | - | 1541 | |
| NAB2 | - | - | 1559 | |
| FGFR3 | - | -1 | 1648 | |
| LHX1 | - | - | 1926 | |
| HOXB8 | - | - | 1971 | |
| NKX3-2 | - | - | 2048 | |
| TBX1 | 0.25 | 1 | 2049 | |
| SHOX2 | - | - | 2149 | |
| BMI1 | - | - | 2175 | |
| NODAL | - | -1 | 2184 | |
| HOXD9 | - | - | 2201 | |
| DSCAML1 | - | - | 2267 | |
| GNAS | - | -1 | 2352 | |
| DLX5 | - | - | 2361 | |
| BMPR1B | - | -1 | 2397 | |
| TFAP2A | - | -1 | 2460 | |
| COL11A1 | 0.25 | 1 | 2558 | |
| HOXB5 | - | - | 2669 | |
| HOXC8 | - | - | 2815 | |
| ALX3 | - | - | 2844 | |
| HOXD10 | - | - | 2845 | |
| ALX1 | - | - | 2966 | |
| ZFAND5 | - | - | 3126 | |
| ACVR2B | - | -1 | 3179 | |
| BMP6 | - | - | 3242 | |
| COL2A1 | - | -1 | 3352 | |
| HOXA2 | - | - | 3750 | |
| SFRP2 | - | - | 3758 | |
| TBX15 | - | - | 4012 | |
| HOXA7 | - | - | 4063 | |
| TIPARP | - | - | 4069 | |
| CBS | 0.25 | 1 | 4080 | |
| HOXA11 | - | - | 4215 | |
| SKI | - | - | 4231 | |
| CDX1 | - | - | 4523 | |
| SIX4 | - | - | 4623 | |
| FGF18 | - | - | 4736 | |
| FGF4 | - | - | 4827 | |
| WWOX | - | -1 | 5122 | |
| BMP4 | - | -1 | 5180 | |
| TGFB3 | - | -1 | 5321 | |
| ALX4 | - | - | 5466 | |
| HOXD11 | 0.25 | 1 | 5555 | |
| HOXB3 | - | - | 5705 | |
| NDST1 | - | - | 5799 | |
| HOXA6 | - | - | 5800 | |
| SMO | 0.25 | 1 | 5864 | |
| AXIN2 | - | -1 | 5927 | |
| GAS1 | - | - | 5960 | |
| RARA | 0.25 | 1 | 6024 | |
| TGFBR1 | - | -1 | 6027 | |
| OTOR | - | - | 6057 | |
| MEF2A | - | - | 6060 | |
| BARX2 | - | - | 6105 | |
| TWIST1 | - | -1 | 6128 | |
| MYF5 | - | - | 6153 | |
| OSR1 | - | - | 6192 | |
| HOXD8 | - | - | 6575 | |
| SIX2 | - | - | 6713 | |
| MEN1 | - | -1 | 6723 | |
| HOXA5 | - | - | 7014 | |
| SMAD2 | - | - | 7224 | |
| CHST11 | - | - | 7380 | |
| NPPC | - | - | 7442 | |
| NOG | - | -1 | 7650 | |
| GSC | - | - | 8075 | |
| FOXC2 | - | - | 8308 | |
| CARM1 | - | - | 8421 | |
| WNT9B | - | - | 8495 | |
| TULP3 | - | - | 8569 | |
| TBX4 | - | - | 8883 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| COL13A1 | - | - | 9254 | |
| RDH10 | - | - | 9600 | |
| TGFBR2 | - | -1 | 9756 | |
| GHR | - | -1 | 10058 | |
| HOXB7 | - | - | 10514 | |
| DLG1 | - | - | 10557 | |
| FUZ | - | - | 10698 | |
| AXIN1 | - | -1 | 10905 | |
| FGF6 | - | - | 10907 | |
| RARG | 0.25 | 1 | 10956 | |
| PLEKHA1 | - | - | 11683 | |
| MDFI | - | - | 11799 | |
| INSIG2 | - | - | 12416 | |
| PRKRA | - | - | 12617 | |
| RYK | - | - | 12768 | |
| TCF15 | - | - | 12874 | |
| UNCX | - | - | 13746 | |
| WNT9A | - | - | 14123 | |
| TWIST2 | - | - | 14594 | |
| TGFB1 | 0.25 | 1 | 14736 | |
| IDUA | - | -1 | 14893 | |
| CSRNP1 | - | - | 15071 | |
| SIX1 | - | -1 | 15117 | |
| PPARGC1B | - | -1 | 16411 | |
| LRP5 | - | -1 | 16985 | |
| IQCJ-SCHIP1 | - | - | 18546 | |
| OSR2 | - | - | 18904 | |
| HOXB2 | - | - | 20191 | |
| PSEN1 | - | - | 20241 | |
| SGPL1 | - | - | 20483 | |
| PRKRAP1 | - | - | 21445 | |
| GLG1 | - | - | 22724 | |
| MGP | - | - | 22959 | |
| PRRX2 | - | - | 23414 | |
| THBS3 | - | - | 24201 | |
| COL1A1 | - | -1 | 24560 | |
| IMPAD1 | - | - | 24769 | |
| ACP5 | - | - | 24802 | |
| MMP2 | - | - | 24926 | |
| BMP1 | - | - | 25016 | |
| PEX7 | 0.25 | 1 | 25180 |
GO:0048705
| Name | Description | External IDs |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| RUNX2 | runt-related transcription factor 2 | Entrez:860  Ensembl: ENSG00000124813  HGNC: 10472  HPRD: 02566  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| SATB2 | SATB homeobox 2 | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| RUNX2 | runt-related transcription factor 2 |
| Query gene | Gene | Gene description | Edge score |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| RUNX2 | RUNX2 | runt-related transcription factor 2 |