| Gene | Input weight | Standard | Rank | |
| SOX11 | - | - | 66 | |
| PFN1 | - | - | 74 | |
| FGFR2 | - | -1 | 165 | |
| SFRP1 | - | - | 204 | |
| PPP3R1 | - | - | 310 | |
| LHX2 | - | - | 362 | |
| RET | - | -1 | 384 | |
| SALL1 | - | - | 408 | |
| PCDH8 | - | - | 440 | |
| PAX2 | - | - | 459 | |
| NR3C1 | - | - | 463 | |
| SOX4 | - | - | 581 | |
| IGF1R | - | - | 631 | |
| ZIC3 | - | -1 | 722 | |
| LRP6 | - | - | 778 | |
| PBX1 | - | - | 823 | |
| BMP7 | - | - | 987 | |
| HIF1A | - | - | 1008 | |
| SOX9 | - | -1 | 1045 | |
| DLC1 | - | - | 1105 | |
| PTCH1 | - | -1 | 1149 | |
| NCOA3 | - | - | 1178 | |
| PTHLH | - | -1 | 1269 | |
| FOXF2 | - | - | 1315 | |
| LMO4 | - | - | 1406 | |
| AR | 0.25 | 1 | 1499 | |
| SMAD3 | - | - | 1541 | |
| SEMA5A | 0.5 | 1 | 1546 | |
| ZIC2 | - | -1 | 1550 | |
| FGFR3 | - | -1 | 1648 | |
| LEF1 | - | - | 1731 | |
| TBX5 | - | - | 1743 | |
| FOXA2 | - | - | 1835 | |
| TSC1 | 0.25 | 1 | 1844 | |
| CITED1 | - | - | 1867 | |
| ESR1 | 0.25 | 1 | 1914 | |
| LHX1 | - | - | 1926 | |
| OPA1 | - | - | 1951 | |
| VANGL2 | - | - | 1957 | |
| ENAH | - | - | 1958 | |
| NRP1 | - | - | 1961 | |
| IGF1 | 0.25 | 1 | 1993 | |
| FGF7 | - | - | 1995 | |
| SEMA3A | - | - | 2076 | |
| MAP3K7 | - | - | 2169 | |
| NODAL | - | -1 | 2184 | |
| SRC | - | - | 2241 | |
| FOXD3 | - | - | 2272 | |
| FOXA1 | - | - | 2277 | |
| FLT1 | 0.25 | 1 | 2278 | |
| RSPO3 | - | - | 2379 | |
| HHIP | - | - | 2403 | |
| BTRC | - | - | 2430 | |
| TFAP2A | - | -1 | 2460 | |
| NKX2-1 | - | - | 2488 | |
| FGFR1 | - | - | 2550 | |
| T | - | - | 2584 | |
| JAG1 | - | -1 | 2588 | |
| GRB2 | - | - | 2662 | |
| SRF | - | - | 2700 | |
| PGR | - | - | 2715 | |
| HAND1 | - | - | 2763 | |
| NKX3-1 | - | - | 2779 | |
| EGFR | - | -1 | 2811 | |
| WNT5A | - | - | 2870 | |
| WNT6 | - | - | 2891 | |
| DEAF1 | - | - | 2911 | |
| ILK | - | - | 2917 | |
| ALX1 | - | - | 2966 | |
| PAX8 | - | -1 | 3021 | |
| WT1 | - | -1 | 3046 | |
| FOXF1 | - | -1 | 3053 | |
| MIB1 | - | - | 3110 | |
| COBL | 0.25 | 1 | 3131 | |
| GATA3 | - | - | 3207 | |
| CSF1 | - | - | 3235 | |
| WNT1 | - | - | 3263 | |
| EDNRA | - | -1 | 3271 | |
| EPB41L5 | - | - | 3311 | |
| NOTCH1 | - | -1 | 3360 | |
| ALDH1A2 | - | - | 3466 | |
| RSPO2 | - | - | 3476 | |
| SOX17 | - | - | 3484 | |
| FZD3 | - | - | 3579 | |
| GBX2 | - | - | 3588 | |
| HOXA13 | - | - | 3602 | |
| DAG1 | - | - | 3662 | |
| HAND2 | - | - | 3736 | |
| SFRP2 | - | - | 3758 | |
| WNT16 | - | - | 3772 | |
| AGT | - | -1 | 3783 | |
| DDR1 | - | - | 4212 | |
| HOXA11 | - | - | 4215 | |
| SKI | - | - | 4231 | |
| FGF10 | - | -1 | 4373 | |
| DVL3 | - | - | 4438 | |
| GDNF | - | -1 | 4462 | |
| HOXD13 | 0.25 | 1 | 4465 | |
| WNT11 | - | - | 4528 | |
| IL6 | - | -1 | 4578 | |
| ZEB2 | - | - | 4607 | |
| RGMA | - | - | 4651 | |
| VEGFA | 0.25 | 1 | 4691 | |
| HOXB13 | - | - | 4705 | |
| IHH | - | -1 | 4742 | |
| SOX8 | - | - | 4770 | |
| WNT3A | - | - | 4844 | |
| FREM2 | - | - | 4933 | |
| CD44 | - | - | 5047 | |
| TCF21 | - | - | 5065 | |
| GPC3 | - | -1 | 5153 | |
| BMP4 | - | -1 | 5180 | |
| FOXJ1 | - | - | 5202 | |
| VEGFC | - | - | 5203 | |
| FOXD1 | - | - | 5256 | |
| NTN1 | - | - | 5275 | |
| LBX1 | - | - | 5371 | |
| C2CD3 | - | - | 5468 | |
| NKX2-5 | 0.25 | 1 | 5490 | |
| FOXD2 | - | - | 5493 | |
| CELSR1 | - | - | 5539 | |
| NKX2-3 | - | - | 5540 | |
| HOXD11 | 0.25 | 1 | 5555 | |
| IRX2 | - | - | 5779 | |
| SMO | 0.25 | 1 | 5864 | |
| TBX20 | - | -1 | 6000 | |
| FOXL2 | - | -1 | 6002 | |
| IPMK | - | - | 6074 | |
| IFT122 | - | -1 | 6114 | |
| TWIST1 | - | -1 | 6128 | |
| GCM1 | - | - | 6140 | |
| OSR1 | - | - | 6192 | |
| SEMA3C | - | - | 6197 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| CTNNBIP1 | - | - | 6252 | |
| KIF26B | - | - | 6333 | |
| MED1 | - | - | 6574 | |
| SIX2 | - | - | 6713 | |
| GRHL3 | - | - | 6732 | |
| TGIF1 | - | -1 | 6785 | |
| CTNND1 | - | - | 6834 | |
| HOXA5 | - | - | 7014 | |
| CCL11 | - | - | 7037 | |
| CXCL12 | - | - | 7204 | |
| FOXD4L1 | - | - | 7290 | |
| GDF7 | - | - | 7494 | |
| PSPN | - | - | 7530 | |
| NOG | - | -1 | 7650 | |
| NPNT | - | - | 7660 | |
| WNT7B | - | - | 7693 | |
| TINAG | - | - | 7755 | |
| PGF | - | - | 7841 | |
| VASP | - | - | 8124 | |
| GJA1 | 0.25 | 1 | 8195 | |
| FOXC2 | - | - | 8308 | |
| PDX1 | - | -1 | 8378 | |
| HS2ST1 | - | - | 8389 | |
| WNT9B | - | - | 8495 | |
| IRX3 | - | - | 8539 | |
| TULP3 | - | - | 8569 | |
| KDM2B | - | - | 8663 | |
| TBX4 | - | - | 8883 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| GRSF1 | - | - | 9150 | |
| SALL4 | - | - | 9465 | |
| NFATC3 | - | - | 9474 | |
| BBS5 | - | -1 | 9517 | |
| FRZB | - | - | 9553 | |
| HNF1B | - | -1 | 9562 | |
| EDN1 | - | - | 9566 | |
| RDH10 | - | - | 9600 | |
| FGF2 | - | - | 9627 | |
| TGFBR2 | - | -1 | 9756 | |
| FOXD4 | - | - | 9835 | |
| SUFU | - | -1 | 9989 | |
| RBM15 | - | - | 10015 | |
| GZF1 | - | - | 10434 | |
| FOXD4L4 | - | - | 10472 | |
| DLG1 | - | - | 10557 | |
| CRYGS | - | - | 10592 | |
| BBS4 | - | -1 | 10693 | |
| FUZ | - | - | 10698 | |
| ADM | - | - | 10761 | |
| CA9 | - | - | 10770 | |
| MESP1 | - | - | 10948 | |
| RARG | 0.25 | 1 | 10956 | |
| GATA4 | - | -1 | 11137 | |
| TSC2 | 0.25 | 1 | 11448 | |
| SYNE4 | - | - | 11480 | |
| WNT5B | - | - | 11732 | |
| FOXH1 | - | - | 11747 | |
| ACVR1 | - | -1 | 11780 | |
| GDF2 | - | - | 11942 | |
| NOTCH4 | - | - | 12179 | |
| DVL2 | - | - | 12293 | |
| PDGFB | - | - | 12484 | |
| FRS2 | - | - | 12610 | |
| JUP | - | -1 | 12627 | |
| PODXL | - | - | 12778 | |
| MKKS | - | -1 | 12900 | |
| TNC | - | - | 13117 | |
| PLXND1 | - | - | 13176 | |
| TGM2 | - | - | 13660 | |
| TGFB1 | 0.25 | 1 | 14736 | |
| SIX1 | - | -1 | 15117 | |
| NRARP | - | - | 15165 | |
| FOXS1 | - | - | 15328 | |
| SOCS3 | - | - | 15768 | |
| ALDH1A3 | - | - | 15783 | |
| SHH | - | -1 | 15942 | |
| SOX18 | - | - | 16286 | |
| IFT52 | - | - | 16550 | |
| FOXD4L5 | - | - | 16935 | |
| LRP5 | - | -1 | 16985 | |
| ENG | - | -1 | 17647 | |
| FOXD4L2 | - | - | 17995 | |
| DVL1P1 | - | - | 19166 | |
| LAMA5 | - | - | 19186 | |
| STAT5A | - | - | 19316 | |
| TEAD2 | - | - | 19457 | |
| FOXD4L6 | - | - | 19463 | |
| FZD6 | - | - | 19825 | |
| HOXB2 | - | - | 20191 | |
| VDR | - | - | 20212 | |
| PSEN1 | - | - | 20241 | |
| SERPINB5 | - | - | 20321 | |
| VCL | - | -1 | 20649 | |
| PTK7 | - | - | 20787 | |
| CA2 | - | -1 | 20831 | |
| CCM2 | - | - | 20854 | |
| MYC | - | -1 | 21066 | |
| DVL1 | - | - | 21155 | |
| WNT4 | - | - | 21840 | |
| IFT172 | - | - | 22164 | |
| SETDB2 | 0.25 | 1 | 22446 | |
| CTSZ | - | - | 22603 | |
| TGFB1I1 | - | - | 22730 | |
| KAT2A | - | - | 22874 | |
| CASP8 | - | -1 | 22936 | |
| TP63 | - | -1 | 24113 | |
| TIMELESS | - | - | 24141 | |
| BCL10 | - | -1 | 24165 | |
| BBS7 | - | -1 | 24350 | |
| SCRIB | - | - | 24455 | |
| SPINT1 | - | - | 24598 | |
| LIAS | - | - | 25118 | |
| PML | - | - | 25248 |
GO:0002009
| Name | Description | External IDs |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| PFN1 | profilin 1 | Entrez:5216  Ensembl: ENSG00000108518  HGNC: 8881  HPRD: 01452  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| PPP3R1 | protein phosphatase 3, regulatory subunit B, alpha | Entrez:5534  HPRD: 03195  HGNC: 9317  Ensembl: ENSG00000221823  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| PFN1 | profilin 1 | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| PPP3R1 | protein phosphatase 3, regulatory subunit B, alpha |
| Query gene | Gene | Gene description | Edge score |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| PFN1 | PFN1 | profilin 1 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| PPP3R1 | PPP3R1 | protein phosphatase 3, regulatory subunit B, alpha |