| Gene | Input weight | Standard | Rank | |
| SOX11 | - | - | 66 | |
| SATB2 | 0.25 | 1 | 108 | |
| FGF9 | - | - | 241 | |
| MYCN | - | - | 419 | |
| SP3 | - | - | 536 | |
| NIPBL | - | -1 | 561 | |
| HOXD3 | - | - | 785 | |
| PBX1 | - | - | 823 | |
| BMP7 | - | - | 987 | |
| HOXD4 | - | - | 1131 | |
| DLX2 | 0.25 | 1 | 1235 | |
| PCGF2 | - | - | 1393 | |
| PRRX1 | - | - | 1491 | |
| SMAD3 | - | - | 1541 | |
| ACVR2A | - | - | 1768 | |
| LHX1 | - | - | 1926 | |
| HOXB8 | - | - | 1971 | |
| HOXD1 | - | - | 1980 | |
| PAX7 | - | -1 | 2033 | |
| NKX3-2 | - | - | 2048 | |
| TBX1 | 0.25 | 1 | 2049 | |
| RBP4 | - | - | 2097 | |
| SHOX2 | - | - | 2149 | |
| BMI1 | - | - | 2175 | |
| NODAL | - | -1 | 2184 | |
| HOXD9 | - | - | 2201 | |
| DSCAML1 | - | - | 2267 | |
| GNAS | - | -1 | 2352 | |
| DLX1 | 0.25 | 1 | 2366 | |
| TFAP2A | - | -1 | 2460 | |
| COL11A1 | 0.25 | 1 | 2558 | |
| HOXB5 | - | - | 2669 | |
| ALX3 | - | - | 2844 | |
| HOXD10 | - | - | 2845 | |
| WNT5A | - | - | 2870 | |
| DEAF1 | - | - | 2911 | |
| ALX1 | - | - | 2966 | |
| COL2A1 | - | -1 | 3352 | |
| HOXA3 | - | - | 3502 | |
| HOXB6 | - | - | 3623 | |
| HOXA2 | - | - | 3750 | |
| TBX15 | - | - | 4012 | |
| HOXA7 | - | - | 4063 | |
| WNT11 | - | - | 4528 | |
| SIX4 | - | - | 4623 | |
| IHH | - | -1 | 4742 | |
| BMP4 | - | -1 | 5180 | |
| TGFB3 | - | -1 | 5321 | |
| ALX4 | - | - | 5466 | |
| HOXB3 | - | - | 5705 | |
| NDST1 | - | - | 5799 | |
| HOXA6 | - | - | 5800 | |
| SMO | 0.25 | 1 | 5864 | |
| GAS1 | - | - | 5960 | |
| TGFBR1 | - | -1 | 6027 | |
| TWIST1 | - | -1 | 6128 | |
| MYF5 | - | - | 6153 | |
| OSR1 | - | - | 6192 | |
| KIAA1217 | - | - | 6637 | |
| SIX2 | - | - | 6713 | |
| MEN1 | - | -1 | 6723 | |
| HOXA5 | - | - | 7014 | |
| SMAD2 | - | - | 7224 | |
| CHST11 | - | - | 7380 | |
| NOG | - | -1 | 7650 | |
| GSC | - | - | 8075 | |
| FOXC2 | - | - | 8308 | |
| WNT9B | - | - | 8495 | |
| TULP3 | - | - | 8569 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| RDH10 | - | - | 9600 | |
| TGFBR2 | - | -1 | 9756 | |
| HOXB7 | - | - | 10514 | |
| DLG1 | - | - | 10557 | |
| FUZ | - | - | 10698 | |
| AXIN1 | - | -1 | 10905 | |
| MDFI | - | - | 11799 | |
| PCSK5 | - | - | 12160 | |
| SP1 | - | - | 12422 | |
| TAPT1 | - | - | 12643 | |
| WNT9A | - | - | 14123 | |
| TWIST2 | - | - | 14594 | |
| SIX1 | - | -1 | 15117 | |
| SHH | - | -1 | 15942 | |
| OSR2 | - | - | 18904 | |
| PRRX2 | - | - | 23414 | |
| COL1A1 | - | -1 | 24560 |
GO:0048706
| Name | Description | External IDs |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664 HGNC: 11191 Ensembl: ENSG00000176887 HPRD: 02940 |
| SATB2 | SATB homeobox 2 | Entrez:23314 Ensembl: ENSG00000119042 HPRD: 12178 HGNC: 21637 |
| FGF9 | fibroblast growth factor 9 | Entrez:2254 HPRD: 02951 HGNC: 3687 Ensembl: ENSG00000102678 |
| MYCN | v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog | Entrez:4613 Ensembl: ENSG00000134323 HGNC: 7559 HPRD: 01278 |
| SP3 | Sp3 transcription factor | Entrez:6670 HPRD: 03483 HGNC: 11208 Ensembl: ENSG00000172845 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| SATB2 | SATB homeobox 2 | ||||
| FGF9 | fibroblast growth factor 9 | ||||
| MYCN | v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog | ||||
| SP3 | Sp3 transcription factor |
| Query gene | Gene | Gene description | Edge score |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| FGF9 | FGF9 | fibroblast growth factor 9 | |
| MYCN | MYCN | v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog | |
| SP3 | SP3 | Sp3 transcription factor |