| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 125 | |
| PAX2 | - | - | 459 | |
| NODAL | - | -1 | 2184 | |
| SMAD1 | - | - | 2829 | |
| KLF4 | - | - | 3003 | |
| SOX17 | - | - | 3484 | |
| HOXA11 | - | - | 4215 | |
| EYA2 | - | - | 4403 | |
| NANOG | - | - | 4730 | |
| WNT3A | - | - | 4844 | |
| BMP4 | - | -1 | 5180 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| SIX2 | - | - | 6713 | |
| WNT8A | - | - | 7061 | |
| FOXC2 | - | - | 8308 | |
| TDGF1P3 | - | - | 9149 | |
| TRIM15 | - | - | 13912 | |
| FOXS1 | - | - | 15328 | |
| POU5F1 | - | - | 21422 | |
| FOXC1 | - | -1 | 22868 |
GO:0060795
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| PAX2 | paired box 2 | Entrez:5076  HGNC: 8616  Ensembl: ENSG00000075891  HPRD: 01330  |
| NODAL | nodal growth differentiation factor | Entrez:4838  HGNC: 7865  HPRD: 08370  |
| SMAD1 | SMAD family member 1 | Entrez:4086  Ensembl: ENSG00000170365  HGNC: 6767  HPRD: 03356  |
| KLF4 | Kruppel-like factor 4 (gut) | Entrez:9314  HGNC: 6348  Ensembl: ENSG00000136826  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| PAX2 | paired box 2 | ||||
| NODAL | nodal growth differentiation factor | ||||
| SMAD1 | SMAD family member 1 | ||||
| KLF4 | Kruppel-like factor 4 (gut) |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| PAX2 | PAX2 | paired box 2 | |
| NODAL | NODAL | nodal growth differentiation factor | |
| SMAD1 | SMAD1 | SMAD family member 1 | |
| KLF4 | KLF4 | Kruppel-like factor 4 (gut) |