| Gene | Input weight | Standard | Rank | |
| SOX2 | - | -1 | 125 | |
| SFRP1 | - | - | 204 | |
| APC | 0.25 | 1 | 528 | |
| APC2 | - | - | 671 | |
| SOX9 | - | -1 | 1045 | |
| LRP4 | - | - | 1290 | |
| HDAC2 | - | - | 1413 | |
| AES | - | - | 1548 | |
| LEF1 | - | - | 1731 | |
| DKK2 | - | - | 2075 | |
| MCC | - | - | 2843 | |
| WNT5A | - | - | 2870 | |
| LATS1 | - | - | 3031 | |
| SOX17 | - | - | 3484 | |
| SFRP4 | - | - | 3511 | |
| EGR1 | - | - | 3527 | |
| DAB2IP | - | - | 3635 | |
| SFRP2 | - | - | 3758 | |
| DKK3 | - | - | 4056 | |
| WNT11 | - | - | 4528 | |
| DRAXIN | - | - | 4545 | |
| SIAH2 | - | - | 4934 | |
| GPC3 | - | -1 | 5153 | |
| PRICKLE1 | - | -1 | 5311 | |
| NKX2-5 | 0.25 | 1 | 5490 | |
| TCF7L2 | - | -1 | 5670 | |
| SOST | - | - | 5795 | |
| CYLD | - | -1 | 5851 | |
| AXIN2 | - | -1 | 5927 | |
| STK4 | - | - | 6010 | |
| GLI1 | - | - | 6597 | |
| CTNND1 | - | - | 6834 | |
| DKK1 | - | - | 6892 | |
| TBX18 | - | - | 7034 | |
| TLE2 | - | - | 7919 | |
| GLI3 | - | -1 | 9032 | |
| FRZB | - | - | 9553 | |
| SFRP5 | - | - | 9913 | |
| AXIN1 | - | -1 | 10905 | |
| MESP1 | - | - | 10948 | |
| WNT5B | - | - | 11732 | |
| DDIT3 | - | - | 12944 | |
| NPHP3 | - | -1 | 14055 | |
| LATS2 | - | - | 15008 | |
| SHH | - | -1 | 15942 | |
| FZD6 | - | - | 19825 | |
| WNT4 | - | - | 21840 | |
| FZD1 | - | - | 22086 | |
| INVS | - | -1 | 22094 | |
| STK3 | - | - | 22605 | |
| WWTR1 | - | - | 22777 | |
| SNAI2 | - | -1 | 22934 | |
| PFDN5 | - | - | 23979 | |
| SCYL2 | - | - | 24230 | |
| CAV1 | - | -1 | 24767 | |
| CBY1 | - | - | 24830 | |
| DAB2 | - | - | 24837 |
GO:0090090
| Name | Description | External IDs |
| SOX2 | SRY (sex determining region Y)-box 2 | Entrez:6657  HGNC: 11195  HPRD: 08921  Ensembl: ENSG00000181449  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| APC | adenomatous polyposis coli | Entrez:324  HGNC: 583  HPRD: 01439  Ensembl: ENSG00000134982  |
| APC2 | adenomatosis polyposis coli 2 | Entrez:10297  Ensembl: ENSG00000115266  HGNC: 24036  HPRD: 09802  |
| SOX9 | SRY (sex determining region Y)-box 9 | Entrez:6662  HPRD: 06427  HGNC: 11204  Ensembl: ENSG00000125398  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX2 | SRY (sex determining region Y)-box 2 | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| APC | adenomatous polyposis coli | ||||
| APC2 | adenomatosis polyposis coli 2 | ||||
| SOX9 | SRY (sex determining region Y)-box 9 |
| Query gene | Gene | Gene description | Edge score |
| SOX2 | SOX2 | SRY (sex determining region Y)-box 2 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| APC | APC | adenomatous polyposis coli | |
| APC2 | APC2 | adenomatosis polyposis coli 2 | |
| SOX9 | SOX9 | SRY (sex determining region Y)-box 9 |