| Gene | Input weight | Standard | Rank | |
| NEUROD1 | - | -1 | 136 | |
| SFRP1 | - | - | 204 | |
| PLXNA2 | - | - | 235 | |
| PAX6 | 0.25 | 1 | 355 | |
| MLLT3 | - | - | 433 | |
| PCDH8 | - | - | 440 | |
| APC | 0.25 | 1 | 528 | |
| FEZF2 | 0.25 | 1 | 712 | |
| ZIC3 | - | -1 | 722 | |
| PCSK6 | - | - | 731 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| DLL3 | - | -1 | 816 | |
| PBX1 | - | - | 823 | |
| PGAP1 | - | - | 865 | |
| MEOX2 | - | - | 949 | |
| BMPR2 | - | -1 | 964 | |
| WNT10B | - | - | 1030 | |
| HIPK1 | - | - | 1034 | |
| HOXD4 | - | - | 1131 | |
| PBX3 | - | - | 1184 | |
| OTX2 | - | -1 | 1295 | |
| PCGF2 | - | - | 1393 | |
| SMAD3 | - | - | 1541 | |
| YY1 | - | - | 1729 | |
| LEF1 | - | - | 1731 | |
| SIX3 | - | -1 | 1742 | |
| ACVR2A | - | - | 1768 | |
| FOXA2 | - | - | 1835 | |
| LHX1 | - | - | 1926 | |
| VANGL2 | - | - | 1957 | |
| HOXB8 | - | - | 1971 | |
| BMPR1A | - | - | 2059 | |
| DLL1 | - | - | 2143 | |
| BMI1 | - | - | 2175 | |
| CYP26A1 | - | - | 2181 | |
| NODAL | - | -1 | 2184 | |
| HOXD9 | - | - | 2201 | |
| HIPK2 | - | - | 2306 | |
| WNT8B | - | - | 2506 | |
| T | - | - | 2584 | |
| CDX2 | - | - | 2595 | |
| HOXB5 | - | - | 2669 | |
| SRF | - | - | 2700 | |
| MYF6 | - | - | 2717 | |
| NKX3-1 | - | - | 2779 | |
| HOXC8 | - | - | 2815 | |
| HOXD10 | - | - | 2845 | |
| WNT5A | - | - | 2870 | |
| WNT6 | - | - | 2891 | |
| SMAD4 | - | - | 2927 | |
| ALX1 | - | - | 2966 | |
| FOXF1 | - | -1 | 3053 | |
| MIB1 | - | - | 3110 | |
| ACVR2B | - | -1 | 3179 | |
| WNT1 | - | - | 3263 | |
| EPB41L5 | - | - | 3311 | |
| GDF11 | - | - | 3345 | |
| NOTCH1 | - | -1 | 3360 | |
| ALDH1A2 | - | - | 3466 | |
| CDON | - | - | 3482 | |
| HOXA3 | - | - | 3502 | |
| GBX2 | - | - | 3588 | |
| HOXB6 | - | - | 3623 | |
| HOXA2 | - | - | 3750 | |
| SFRP2 | - | - | 3758 | |
| WNT16 | - | - | 3772 | |
| TBX3 | - | - | 3843 | |
| EN1 | - | - | 3999 | |
| HOXA7 | - | - | 4063 | |
| OTX1 | - | - | 4110 | |
| CDX4 | - | - | 4130 | |
| FOXB1 | - | - | 4202 | |
| SKI | - | - | 4231 | |
| TSHZ1 | - | - | 4351 | |
| HOXD13 | 0.25 | 1 | 4465 | |
| CDX1 | - | - | 4523 | |
| WNT11 | - | - | 4528 | |
| ZEB2 | - | - | 4607 | |
| NR2F2 | - | - | 4609 | |
| HOXC4 | - | - | 4616 | |
| WNT3 | - | - | 4799 | |
| WNT3A | - | - | 4844 | |
| BARX1 | - | - | 4860 | |
| GPC3 | - | -1 | 5153 | |
| BMP4 | - | -1 | 5180 | |
| CER1 | - | - | 5192 | |
| ALX4 | - | - | 5466 | |
| CELSR1 | - | - | 5539 | |
| HES1 | 0.25 | 1 | 5662 | |
| HOXA6 | - | - | 5800 | |
| AXIN2 | - | -1 | 5927 | |
| TGFBR1 | - | -1 | 6027 | |
| MYF5 | - | - | 6153 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| CTNNBIP1 | - | - | 6252 | |
| CRKL | - | - | 6254 | |
| WNT7A | - | - | 6375 | |
| TDRD5 | - | - | 6427 | |
| ABI1 | - | - | 6440 | |
| HOXD8 | - | - | 6575 | |
| HOXC13 | - | - | 6596 | |
| HES7 | - | -1 | 6789 | |
| TDGF1 | - | - | 6833 | |
| CYP26C1 | - | - | 6885 | |
| HOXA5 | - | - | 7014 | |
| RIPPLY2 | - | - | 7060 | |
| WNT8A | - | - | 7061 | |
| SMAD2 | - | - | 7224 | |
| WNT7B | - | - | 7693 | |
| FOXC2 | - | - | 8308 | |
| RIPPLY1 | - | - | 8488 | |
| WNT9B | - | - | 8495 | |
| RNF2 | - | - | 8552 | |
| KDM2B | - | - | 8663 | |
| HES3 | - | - | 8916 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| GRSF1 | - | - | 9150 | |
| WNT10A | - | - | 9302 | |
| GDF3 | - | -1 | 9473 | |
| LFNG | - | -1 | 9491 | |
| HNF1B | - | -1 | 9562 | |
| ARC | 0.25 | 1 | 9982 | |
| HOXB7 | - | - | 10514 | |
| ATM | - | -1 | 10590 | |
| AXIN1 | - | -1 | 10905 | |
| RARG | 0.25 | 1 | 10956 | |
| GATA4 | - | -1 | 11137 | |
| HOXB1 | 0.25 | 1 | 11233 | |
| FEZF1 | 0.25 | 1 | 11491 | |
| WNT5B | - | - | 11732 | |
| FOXH1 | - | - | 11747 | |
| PCSK5 | - | - | 12160 | |
| HHEX | - | - | 12438 | |
| FRS2 | - | - | 12610 | |
| IFT88 | - | - | 12821 | |
| TCF15 | - | - | 12874 | |
| MEOX1 | - | - | 13570 | |
| TCF7L1 | - | - | 13850 | |
| WNT9A | - | - | 14123 | |
| MSGN1 | - | - | 14250 | |
| LDB1 | - | - | 14274 | |
| RING1 | - | - | 14496 | |
| TCAP | - | -1 | 14527 | |
| FOXS1 | - | - | 15328 | |
| SHH | - | -1 | 15942 | |
| WLS | - | - | 16366 | |
| LRP5 | - | -1 | 16985 | |
| HOXB2 | - | - | 20191 | |
| PSEN1 | - | - | 20241 | |
| POFUT1 | - | - | 20890 | |
| PSEN2 | - | - | 21431 | |
| WNT4 | - | - | 21840 | |
| FZD5 | - | - | 21891 | |
| PLD6 | - | - | 22708 | |
| FOXC1 | - | -1 | 22868 | |
| KAT2A | - | - | 22874 | |
| MESP2 | - | -1 | 23558 |
GO:0009952
| Name | Description | External IDs |
| NEUROD1 | neuronal differentiation 1 | Entrez:4760 HPRD: 03428 HGNC: 7762 Ensembl: ENSG00000162992 |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422 HPRD: 09165 Ensembl: ENSG00000104332 HGNC: 10776 |
| PLXNA2 | plexin A2 | Entrez:5362 HPRD: 03033 Ensembl: ENSG00000076356 HGNC: 9100 |
| PAX6 | paired box 6 | Entrez:5080 HPRD: 06167 Ensembl: ENSG00000007372 HGNC: 8620 |
| MLLT3 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 | Entrez:4300 Ensembl: ENSG00000171843 HGNC: 7136 HPRD: 01163 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| NEUROD1 | neuronal differentiation 1 | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| PLXNA2 | plexin A2 | ||||
| PAX6 | paired box 6 | ||||
| MLLT3 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 |
| Query gene | Gene | Gene description | Edge score |
| NEUROD1 | NEUROD1 | neuronal differentiation 1 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| PLXNA2 | PLXNA2 | plexin A2 | |
| PAX6 | PAX6 | paired box 6 | |
| MLLT3 | MLLT3 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 |