| Gene | Input weight | Standard | Rank | |
| ZIC3 | - | -1 | 722 | |
| PCSK6 | - | - | 731 | |
| LRP6 | - | - | 778 | |
| HIF1A | - | - | 1008 | |
| SMAD3 | - | - | 1541 | |
| RFX3 | - | - | 1687 | |
| ACVR2A | - | - | 1768 | |
| VANGL2 | - | - | 1957 | |
| NKX3-2 | - | - | 2048 | |
| DLL1 | - | - | 2143 | |
| NODAL | - | -1 | 2184 | |
| WNT8B | - | - | 2506 | |
| SRF | - | - | 2700 | |
| HAND1 | - | - | 2763 | |
| WNT5A | - | - | 2870 | |
| FOXF1 | - | -1 | 3053 | |
| MIB1 | - | - | 3110 | |
| ACVR2B | - | -1 | 3179 | |
| NOTCH1 | - | -1 | 3360 | |
| CITED2 | - | - | 3457 | |
| ALDH1A2 | - | - | 3466 | |
| SOX17 | - | - | 3484 | |
| HAND2 | - | - | 3736 | |
| FGF10 | - | -1 | 4373 | |
| IHH | - | -1 | 4742 | |
| WNT3A | - | - | 4844 | |
| FOXJ1 | - | - | 5202 | |
| LBX1 | - | - | 5371 | |
| C2CD3 | - | - | 5468 | |
| NKX2-5 | 0.25 | 1 | 5490 | |
| DNAH11 | - | -1 | 5683 | |
| SMO | 0.25 | 1 | 5864 | |
| TBX20 | - | -1 | 6000 | |
| ARL6 | - | -1 | 6076 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| TGIF1 | - | -1 | 6785 | |
| RIPPLY2 | - | - | 7060 | |
| PITX2 | - | -1 | 7241 | |
| CCDC39 | - | - | 7276 | |
| GJA1 | 0.25 | 1 | 8195 | |
| KIF3B | - | - | 8787 | |
| RTTN | - | - | 9155 | |
| BBS5 | - | -1 | 9517 | |
| SUFU | - | -1 | 9989 | |
| CFC1 | - | -1 | 10292 | |
| CCDC40 | - | - | 10351 | |
| BBS4 | - | -1 | 10693 | |
| AXIN1 | - | -1 | 10905 | |
| MESP1 | - | - | 10948 | |
| GATA4 | - | -1 | 11137 | |
| FOXH1 | - | - | 11747 | |
| ACVR1 | - | -1 | 11780 | |
| DAND5 | - | - | 12393 | |
| IFT88 | - | - | 12821 | |
| MKKS | - | -1 | 12900 | |
| DYNC2LI1 | - | - | 14205 | |
| SHH | - | -1 | 15942 | |
| SOX18 | - | - | 16286 | |
| IFT52 | - | - | 16550 | |
| ENG | - | -1 | 17647 | |
| RPGRIP1L | - | - | 19545 | |
| PSEN1 | - | - | 20241 | |
| IFT172 | - | - | 22164 | |
| SETDB2 | 0.25 | 1 | 22446 | |
| DISP1 | - | - | 23291 | |
| BBS7 | - | -1 | 24350 | |
| OFD1 | - | -1 | 25496 |
GO:0009855
| Name | Description | External IDs |
| ZIC3 | Zic family member 3 | Entrez:7547 HGNC: 12874 HPRD: 02225 Ensembl: ENSG00000156925 |
| PCSK6 | proprotein convertase subtilisin/kexin type 6 | Entrez:5046 HPRD: 01329 HGNC: 8569 Ensembl: ENSG00000140479 |
| LRP6 | low density lipoprotein receptor-related protein 6 | Entrez:4040 Ensembl: ENSG00000070018 HGNC: 6698 HPRD: 04617 |
| HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | Entrez:3091 HGNC: 4910 Ensembl: ENSG00000100644 HPRD: 04517 |
| SMAD3 | SMAD family member 3 | Entrez:4088 HPRD: 04380 HGNC: 6769 Ensembl: ENSG00000166949 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| ZIC3 | Zic family member 3 | ||||
| PCSK6 | proprotein convertase subtilisin/kexin type 6 | ||||
| LRP6 | low density lipoprotein receptor-related protein 6 | ||||
| HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | ||||
| SMAD3 | SMAD family member 3 |
| Query gene | Gene | Gene description | Edge score |
| ZIC3 | ZIC3 | Zic family member 3 | |
| PCSK6 | PCSK6 | proprotein convertase subtilisin/kexin type 6 | |
| LRP6 | LRP6 | low density lipoprotein receptor-related protein 6 | |
| HIF1A | HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | |
| SMAD3 | SMAD3 | SMAD family member 3 |