| Gene | Input weight | Standard | Rank | |
| SOX11 | - | - | 66 | |
| PFN1 | - | - | 74 | |
| SATB2 | 0.25 | 1 | 108 | |
| FGFR2 | - | -1 | 165 | |
| SFRP1 | - | - | 204 | |
| PDGFRA | - | -1 | 233 | |
| PLXNA2 | - | - | 235 | |
| FGF9 | - | - | 241 | |
| APBA2 | 0.25 | 1 | 283 | |
| AKT1 | 0.25 | 1 | 303 | |
| NF1 | 0.25 | 1 | 333 | |
| PAX6 | 0.25 | 1 | 355 | |
| LHX2 | - | - | 362 | |
| MYH10 | - | - | 403 | |
| SALL1 | - | - | 408 | |
| PTPRR | - | - | 418 | |
| MYCN | - | - | 419 | |
| PCDH8 | - | - | 440 | |
| PAX2 | - | - | 459 | |
| MAP2K1 | 0.25 | 1 | 474 | |
| FOXG1 | - | - | 483 | |
| ACVR1B | - | - | 510 | |
| SP3 | - | - | 536 | |
| NIPBL | - | -1 | 561 | |
| SOX4 | - | - | 581 | |
| ARNT2 | 0.25 | 1 | 620 | |
| CHRD | - | - | 697 | |
| SMARCA4 | - | - | 751 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| DLL3 | - | -1 | 816 | |
| PBX1 | - | - | 823 | |
| CHD7 | - | -1 | 857 | |
| AMOT | - | - | 933 | |
| MEOX2 | - | - | 949 | |
| PROX1 | - | - | 962 | |
| MAPK1 | - | - | 985 | |
| BMP7 | - | - | 987 | |
| HIF1A | - | - | 1008 | |
| ZFPM2 | - | -1 | 1023 | |
| WNT10B | - | - | 1030 | |
| RUNX1 | - | -1 | 1041 | |
| JUNB | - | - | 1044 | |
| COPS3 | - | - | 1086 | |
| DLC1 | - | - | 1105 | |
| MBNL1 | - | - | 1113 | |
| HOXD4 | - | - | 1131 | |
| PTCH1 | - | -1 | 1149 | |
| NDEL1 | 0.25 | 1 | 1194 | |
| DLX2 | 0.25 | 1 | 1235 | |
| SRSF1 | - | - | 1307 | |
| NCOA6 | - | - | 1361 | |
| PCGF2 | - | - | 1393 | |
| LMO4 | - | - | 1406 | |
| UBE2A | 0.25 | 1 | 1473 | |
| PRRX1 | - | - | 1491 | |
| AR | 0.25 | 1 | 1499 | |
| SOX10 | - | -1 | 1510 | |
| SMAD3 | - | - | 1541 | |
| ZIC2 | - | -1 | 1550 | |
| ZMIZ1 | - | - | 1650 | |
| LEF1 | - | - | 1731 | |
| ACVR2A | - | - | 1768 | |
| WNT2 | 0.25 | 1 | 1783 | |
| PITPNB | - | - | 1814 | |
| FOXA2 | - | - | 1835 | |
| TSC1 | 0.25 | 1 | 1844 | |
| GAB1 | - | - | 1864 | |
| CITED1 | - | - | 1867 | |
| TTPA | - | - | 1875 | |
| LHX1 | - | - | 1926 | |
| SOX6 | - | - | 1939 | |
| OPA1 | - | - | 1951 | |
| VANGL2 | - | - | 1957 | |
| ENAH | - | - | 1958 | |
| HOXB8 | - | - | 1971 | |
| HOXD1 | - | - | 1980 | |
| PAX7 | - | -1 | 2033 | |
| NKX3-2 | - | - | 2048 | |
| TBX1 | 0.25 | 1 | 2049 | |
| BMPR1A | - | - | 2059 | |
| RBP4 | - | - | 2097 | |
| DLL1 | - | - | 2143 | |
| SHOX2 | - | - | 2149 | |
| MAP3K7 | - | - | 2169 | |
| BMI1 | - | - | 2175 | |
| NODAL | - | -1 | 2184 | |
| HOXD9 | - | - | 2201 | |
| DSCAML1 | - | - | 2267 | |
| FOXD3 | - | - | 2272 | |
| MSH2 | - | -1 | 2299 | |
| GNAS | - | -1 | 2352 | |
| MSX1 | - | -1 | 2365 | |
| DLX1 | 0.25 | 1 | 2366 | |
| RSPO3 | - | - | 2379 | |
| TFAP2A | - | -1 | 2460 | |
| MAPK8IP3 | - | - | 2496 | |
| FGFR1 | - | - | 2550 | |
| COL11A1 | 0.25 | 1 | 2558 | |
| CUL3 | 0.5 | 1 | 2576 | |
| T | - | - | 2584 | |
| CDX2 | - | - | 2595 | |
| GRB2 | - | - | 2662 | |
| HOXB5 | - | - | 2669 | |
| SRF | - | - | 2700 | |
| UBE2B | - | - | 2708 | |
| GATA2 | - | -1 | 2710 | |
| MYF6 | - | - | 2717 | |
| HAND1 | - | - | 2763 | |
| NKX3-1 | - | - | 2779 | |
| EGFR | - | -1 | 2811 | |
| ALX3 | - | - | 2844 | |
| HOXD10 | - | - | 2845 | |
| CEBPB | - | - | 2850 | |
| WNT5A | - | - | 2870 | |
| DEAF1 | - | - | 2911 | |
| SMAD4 | - | - | 2927 | |
| MYH9 | - | -1 | 2943 | |
| ALX1 | - | - | 2966 | |
| FOXF1 | - | -1 | 3053 | |
| MIB1 | - | - | 3110 | |
| ZFAND5 | - | - | 3126 | |
| COBL | 0.25 | 1 | 3131 | |
| GATA3 | - | - | 3207 | |
| WNT1 | - | - | 3263 | |
| EDNRA | - | -1 | 3271 | |
| EPB41L5 | - | - | 3311 | |
| COL2A1 | - | -1 | 3352 | |
| NOTCH1 | - | -1 | 3360 | |
| TP53BP2 | - | - | 3400 | |
| CITED2 | - | - | 3457 | |
| ALDH1A2 | - | - | 3466 | |
| HOXA3 | - | - | 3502 | |
| CUBN | - | - | 3517 | |
| PRMT1 | - | - | 3538 | |
| FZD3 | - | - | 3579 | |
| GBX2 | - | - | 3588 | |
| HOXB6 | - | - | 3623 | |
| LMX1B | 0.25 | 1 | 3653 | |
| ESRRB | 0.25 | 1 | 3688 | |
| HAND2 | - | - | 3736 | |
| HOXA2 | - | - | 3750 | |
| SFRP2 | - | - | 3758 | |
| PRDM1 | - | - | 3852 | |
| ACSL4 | - | - | 3871 | |
| EN1 | - | - | 3999 | |
| HES5 | - | - | 4001 | |
| TBX15 | - | - | 4012 | |
| SKIL | - | - | 4016 | |
| HOPX | - | - | 4054 | |
| HOXA7 | - | - | 4063 | |
| CDX4 | - | - | 4130 | |
| FOXB1 | - | - | 4202 | |
| TJP1 | - | - | 4205 | |
| SKI | - | - | 4231 | |
| TSHZ3 | - | - | 4327 | |
| ITGB1 | - | - | 4390 | |
| MECOM | - | - | 4397 | |
| WNT11 | - | - | 4528 | |
| ZEB2 | - | - | 4607 | |
| SIX4 | - | - | 4623 | |
| RGMA | - | - | 4651 | |
| VEGFA | 0.25 | 1 | 4691 | |
| IHH | - | -1 | 4742 | |
| SOX8 | - | - | 4770 | |
| WNT3 | - | - | 4799 | |
| C6 | - | - | 4835 | |
| WNT3A | - | - | 4844 | |
| NASP | - | - | 5017 | |
| CYP1A1 | 0.25 | 1 | 5095 | |
| BMP4 | - | -1 | 5180 | |
| EPAS1 | - | - | 5248 | |
| MED21 | - | - | 5306 | |
| TGFB3 | - | -1 | 5321 | |
| HS6ST1 | - | - | 5357 | |
| SIN3A | - | - | 5383 | |
| BCL2L11 | - | - | 5454 | |
| ALX4 | - | - | 5466 | |
| C2CD3 | - | - | 5468 | |
| NKX2-5 | 0.25 | 1 | 5490 | |
| ATP7A | - | -1 | 5491 | |
| CELSR1 | - | - | 5539 | |
| HES1 | 0.25 | 1 | 5662 | |
| HOXB3 | - | - | 5705 | |
| GLI2 | - | -1 | 5731 | |
| TET1 | - | - | 5732 | |
| NDST1 | - | - | 5799 | |
| HOXA6 | - | - | 5800 | |
| DUSP3 | - | - | 5845 | |
| SMO | 0.25 | 1 | 5864 | |
| COL4A3BP | - | - | 5865 | |
| AXIN2 | - | -1 | 5927 | |
| MNX1 | - | - | 5932 | |
| PLCG1 | - | - | 5952 | |
| GAS1 | - | - | 5960 | |
| TGFBR1 | - | -1 | 6027 | |
| IPMK | - | - | 6074 | |
| IFT122 | - | -1 | 6114 | |
| TWIST1 | - | -1 | 6128 | |
| GCM1 | - | - | 6140 | |
| MYF5 | - | - | 6153 | |
| HSF1 | - | - | 6191 | |
| OSR1 | - | - | 6192 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| KEAP1 | - | - | 6336 | |
| DNMT3L | - | - | 6366 | |
| ABI1 | - | - | 6440 | |
| FUT8 | - | - | 6488 | |
| MED1 | - | - | 6574 | |
| KIAA1217 | - | - | 6637 | |
| SIX2 | - | - | 6713 | |
| MEN1 | - | -1 | 6723 | |
| TGIF1 | - | -1 | 6785 | |
| HES7 | - | -1 | 6789 | |
| ESX1 | - | - | 6920 | |
| NMT1 | - | - | 6976 | |
| NLRP5 | - | - | 7004 | |
| HOXA5 | - | - | 7014 | |
| SLC34A2 | - | -1 | 7032 | |
| RIPPLY2 | - | - | 7060 | |
| WNT8A | - | - | 7061 | |
| BCL2L1 | - | - | 7198 | |
| SMAD2 | - | - | 7224 | |
| CHST11 | - | - | 7380 | |
| GDF7 | - | - | 7494 | |
| NOG | - | -1 | 7650 | |
| WNT7B | - | - | 7693 | |
| GSC | - | - | 8075 | |
| VASP | - | - | 8124 | |
| GJA1 | 0.25 | 1 | 8195 | |
| HORMAD1 | - | - | 8216 | |
| FOXC2 | - | - | 8308 | |
| MAFG | - | - | 8454 | |
| SNAI1 | - | - | 8474 | |
| RIPPLY1 | - | - | 8488 | |
| WNT9B | - | - | 8495 | |
| TULP3 | - | - | 8569 | |
| KDM2B | - | - | 8663 | |
| ASCL2 | - | - | 8695 | |
| TGFBR3 | - | - | 8717 | |
| DAD1 | - | - | 8854 | |
| HES3 | - | - | 8916 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| MYH6 | - | -1 | 9135 | |
| LY6E | - | - | 9169 | |
| ADD1 | - | -1 | 9458 | |
| SALL4 | - | - | 9465 | |
| GDF3 | - | -1 | 9473 | |
| XAB2 | - | - | 9495 | |
| HNF1B | - | -1 | 9562 | |
| EDN1 | - | - | 9566 | |
| RDH10 | - | - | 9600 | |
| TIE1 | - | - | 9601 | |
| TGFBR2 | - | -1 | 9756 | |
| TAB1 | - | - | 9783 | |
| SUFU | - | -1 | 9989 | |
| ETNK2 | - | - | 10447 | |
| KMT2D | - | - | 10486 | |
| HOXB7 | - | - | 10514 | |
| DLG1 | - | - | 10557 | |
| ATM | - | -1 | 10590 | |
| BBS4 | - | -1 | 10693 | |
| FUZ | - | - | 10698 | |
| ADM | - | - | 10761 | |
| AXIN1 | - | -1 | 10905 | |
| ZNF358 | - | - | 10936 | |
| GNA12 | - | - | 10962 | |
| GATA4 | - | -1 | 11137 | |
| VEZT | - | - | 11311 | |
| EOMES | - | - | 11394 | |
| TSC2 | 0.25 | 1 | 11448 | |
| CEBPA | - | -1 | 11468 | |
| PYGO2 | - | - | 11582 | |
| INSL3 | - | -1 | 11614 | |
| RIC8A | - | - | 11654 | |
| FOXH1 | - | - | 11747 | |
| ACVR1 | - | -1 | 11780 | |
| MDFI | - | - | 11799 | |
| PHGDH | - | -1 | 11898 | |
| UBR3 | - | - | 12025 | |
| OOEP | - | - | 12066 | |
| PCSK5 | - | - | 12160 | |
| DVL2 | - | - | 12293 | |
| ALS2 | - | -1 | 12325 | |
| EVX1 | - | - | 12405 | |
| SP1 | - | - | 12422 | |
| AMBRA1 | - | - | 12424 | |
| PDGFB | - | - | 12484 | |
| EIF2S2 | - | - | 12495 | |
| TAPT1 | - | - | 12643 | |
| IFT88 | - | - | 12821 | |
| TCF15 | - | - | 12874 | |
| SMARCB1 | - | -1 | 12909 | |
| TERF2 | - | - | 12974 | |
| MFN2 | - | -1 | 13282 | |
| GATA6 | - | -1 | 13349 | |
| MEOX1 | - | - | 13570 | |
| PLCD3 | - | - | 13904 | |
| YBX1 | - | - | 13938 | |
| ACVRL1 | - | -1 | 14027 | |
| BTF3 | - | - | 14058 | |
| FBXW8 | - | - | 14094 | |
| WNT9A | - | - | 14123 | |
| EPHA2 | - | -1 | 14150 | |
| SLC30A1 | - | - | 14226 | |
| MSGN1 | - | - | 14250 | |
| APBA3 | - | - | 14469 | |
| CDK11A | - | - | 14473 | |
| TCAP | - | -1 | 14527 | |
| TWIST2 | - | - | 14594 | |
| TCF7 | - | - | 14920 | |
| SIX1 | - | -1 | 15117 | |
| LIG4 | - | -1 | 15324 | |
| FOXS1 | - | - | 15328 | |
| C5 | - | -1 | 15436 | |
| SOCS3 | - | - | 15768 | |
| ZP3 | - | - | 15811 | |
| TFEB | - | - | 15921 | |
| SHH | - | -1 | 15942 | |
| KDM1A | - | - | 15967 | |
| ELL | - | - | 16007 | |
| SOX18 | - | - | 16286 | |
| IFT52 | - | - | 16550 | |
| OSR2 | - | - | 18904 | |
| DVL1P1 | - | - | 19166 | |
| TEAD2 | - | - | 19457 | |
| RPGRIP1L | - | - | 19545 | |
| POLE | - | - | 19601 | |
| CYR61 | - | - | 19764 | |
| FZD6 | - | - | 19825 | |
| PSEN1 | - | - | 20241 | |
| RBBP8 | - | - | 20333 | |
| GJB5 | - | - | 20339 | |
| TAF8 | - | - | 20503 | |
| ECE1 | - | -1 | 20668 | |
| ERCC2 | - | -1 | 20724 | |
| CCNB1IP1 | - | - | 20765 | |
| PTK7 | - | - | 20787 | |
| CCM2 | - | - | 20854 | |
| LIF | - | - | 20888 | |
| POFUT1 | - | - | 20890 | |
| DVL1 | - | - | 21155 | |
| NKX2-6 | - | -1 | 21164 | |
| KLF2 | - | - | 21209 | |
| RCN1 | - | - | 21236 | |
| POU5F1 | - | - | 21422 | |
| PSEN2 | - | - | 21431 | |
| HINFP | - | - | 21497 | |
| XRCC2 | - | - | 21673 | |
| NBN | - | -1 | 21778 | |
| PRPF19 | - | - | 21797 | |
| SBDS | - | - | 21855 | |
| FZD5 | - | - | 21891 | |
| IFT172 | - | - | 22164 | |
| CDK11B | - | - | 22225 | |
| ZNF830 | - | - | 22247 | |
| YBX3 | - | - | 22368 | |
| SYVN1 | - | - | 22468 | |
| PLCD1 | - | - | 22552 | |
| NSDHL | - | - | 22683 | |
| FOXC1 | - | -1 | 22868 | |
| KAT2A | - | - | 22874 | |
| CASP8 | - | -1 | 22936 | |
| GJB3 | - | -1 | 22965 | |
| PRRX2 | - | - | 23414 | |
| CAPN2 | - | - | 23522 | |
| MESP2 | - | -1 | 23558 | |
| ADAM10 | - | - | 23915 | |
| ENDOG | - | - | 24023 | |
| ICMT | - | - | 24111 | |
| BRCA1 | - | -1 | 24158 | |
| BCL10 | - | -1 | 24165 | |
| ADA | 0.5 | 1 | 24175 | |
| RARRES2 | - | - | 24275 | |
| ELF3 | - | - | 24286 | |
| G2E3 | - | - | 24435 | |
| ALKBH1 | - | - | 24439 | |
| NCAPG2 | - | - | 24483 | |
| COL1A1 | - | -1 | 24560 | |
| SPINT1 | - | - | 24598 | |
| INPP5K | - | - | 24643 | |
| CCNB1 | - | - | 24648 | |
| MBD3 | 0.25 | 1 | 24699 | |
| PLOD3 | - | - | 24723 | |
| FLVCR1 | - | - | 24768 | |
| DAB2 | - | - | 24837 | |
| NLE1 | - | - | 24847 | |
| KRT19 | - | - | 24921 | |
| XRCC4 | - | - | 24940 | |
| LIAS | - | - | 25118 | |
| TEAD4 | - | - | 25169 | |
| GINS1 | - | - | 25329 | |
| FXN | - | -1 | 25366 | |
| CCNB2 | - | - | 25403 | |
| PLK4 | - | - | 25448 | |
| PGM3 | - | - | 25620 |
GO:0009792
| Name | Description | External IDs |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| PFN1 | profilin 1 | Entrez:5216  Ensembl: ENSG00000108518  HGNC: 8881  HPRD: 01452  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| PFN1 | profilin 1 | ||||
| SATB2 | SATB homeobox 2 | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| SFRP1 | secreted frizzled-related protein 1 |
| Query gene | Gene | Gene description | Edge score |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| PFN1 | PFN1 | profilin 1 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 |