| Gene | Input weight | Standard | Rank | |
| PPP2CA | - | - | 21 | |
| LHX2 | - | - | 362 | |
| PAX2 | - | - | 459 | |
| NR4A3 | - | -1 | 594 | |
| CHRD | - | - | 697 | |
| DLL3 | - | -1 | 816 | |
| BMPR2 | - | -1 | 964 | |
| BMP7 | - | - | 987 | |
| SMAD3 | - | - | 1541 | |
| PRKAR1A | - | -1 | 1718 | |
| LEF1 | - | - | 1731 | |
| ACVR2A | - | - | 1768 | |
| BMPR1A | - | - | 2059 | |
| NODAL | - | -1 | 2184 | |
| FGFR1 | - | - | 2550 | |
| T | - | - | 2584 | |
| SRF | - | - | 2700 | |
| TSPY1 | - | - | 2702 | |
| HAND1 | - | - | 2763 | |
| SMAD1 | - | - | 2829 | |
| SMAD4 | - | - | 2927 | |
| KLF4 | - | - | 3003 | |
| FOXF1 | - | -1 | 3053 | |
| WNT1 | - | - | 3263 | |
| EPB41L5 | - | - | 3311 | |
| GDF11 | - | - | 3345 | |
| TLX2 | - | - | 3823 | |
| TBX3 | - | - | 3843 | |
| EXT1 | 0.25 | 1 | 3907 | |
| HOXA11 | - | - | 4215 | |
| IKZF3 | - | - | 4370 | |
| EYA2 | - | - | 4403 | |
| VEGFA | 0.25 | 1 | 4691 | |
| NF2 | - | -1 | 4798 | |
| WNT3 | - | - | 4799 | |
| WNT3A | - | - | 4844 | |
| TCF21 | - | - | 5065 | |
| BMP4 | - | -1 | 5180 | |
| BMX | - | - | 5498 | |
| SMO | 0.25 | 1 | 5864 | |
| TBX20 | - | -1 | 6000 | |
| MEST | 0.25 | 1 | 6032 | |
| OSR1 | - | - | 6192 | |
| SIX2 | - | - | 6713 | |
| HES7 | - | -1 | 6789 | |
| WNT8A | - | - | 7061 | |
| SMAD2 | - | - | 7224 | |
| FOXC2 | - | - | 8308 | |
| SNAI1 | - | - | 8474 | |
| IRX3 | - | - | 8539 | |
| PRKACA | - | - | 8797 | |
| TDGF1P3 | - | - | 9149 | |
| GDF3 | - | -1 | 9473 | |
| TIE1 | - | - | 9601 | |
| INHBA | - | - | 9731 | |
| AMH | - | - | 10166 | |
| MATK | - | - | 10849 | |
| AXIN1 | - | -1 | 10905 | |
| MESP1 | - | - | 10948 | |
| EOMES | - | - | 11394 | |
| FOXH1 | - | - | 11747 | |
| ACVR1 | - | -1 | 11780 | |
| TCF15 | - | - | 12874 | |
| TSPY3 | - | - | 13361 | |
| TSPY4 | - | - | 13760 | |
| TCF7L1 | - | - | 13850 | |
| TRIM15 | - | - | 13912 | |
| TSPY2 | - | - | 14044 | |
| EPHA2 | - | -1 | 14150 | |
| FOXS1 | - | - | 15328 | |
| SHH | - | -1 | 15942 | |
| WLS | - | - | 16366 | |
| TSPY8 | - | - | 19438 | |
| JAK2 | - | -1 | 20033 | |
| HCK | - | - | 20165 | |
| BTK | - | -1 | 20625 | |
| TSPY10 | - | - | 21090 | |
| TXNRD1 | - | - | 21631 | |
| IKZF1 | - | - | 21639 | |
| TBX6 | - | - | 22505 | |
| SECTM1 | - | - | 22713 | |
| FOXC1 | - | -1 | 22868 | |
| MESDC2 | - | - | 23457 | |
| ECSIT | - | - | 23466 | |
| MESP2 | - | -1 | 23558 | |
| TP63 | - | -1 | 24113 | |
| EXT2 | - | -1 | 24541 | |
| TWSG1 | - | - | 25171 |
GO:0007498
| Name | Description | External IDs |
| PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | Entrez:5515 HGNC: 9299 HPRD: 08912 |
| LHX2 | LIM homeobox 2 | Entrez:9355 HPRD: 04786 HGNC: 6594 Ensembl: ENSG00000106689 |
| PAX2 | paired box 2 | Entrez:5076 HGNC: 8616 Ensembl: ENSG00000075891 HPRD: 01330 |
| NR4A3 | nuclear receptor subfamily 4, group A, member 3 | Entrez:8013 Ensembl: ENSG00000119508 HGNC: 7982 HPRD: 02766 |
| CHRD | chordin | Entrez:8646 Ensembl: ENSG00000090539 HGNC: 1949 HPRD: 04592 |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | ||||
| LHX2 | LIM homeobox 2 | ||||
| PAX2 | paired box 2 | ||||
| NR4A3 | nuclear receptor subfamily 4, group A, member 3 | ||||
| CHRD | chordin |
| Query gene | Gene | Gene description | Edge score |
| PPP2CA | PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | |
| LHX2 | LHX2 | LIM homeobox 2 | |
| PAX2 | PAX2 | paired box 2 | |
| NR4A3 | NR4A3 | nuclear receptor subfamily 4, group A, member 3 | |
| CHRD | CHRD | chordin |