| Gene | Input weight | Standard | Rank | |
| FGFR2 | - | -1 | 165 | |
| LRP6 | - | - | 778 | |
| RFX4 | - | - | 924 | |
| EN2 | 0.25 | 1 | 1204 | |
| OTX2 | - | -1 | 1295 | |
| MSX1 | - | -1 | 2365 | |
| FGFR1 | - | - | 2550 | |
| SMAD1 | - | - | 2829 | |
| WNT1 | - | - | 3263 | |
| FZD3 | - | - | 3579 | |
| EN1 | - | - | 3999 | |
| OTX1 | - | - | 4110 | |
| FOXB1 | - | - | 4202 | |
| SMAD9 | - | -1 | 4245 | |
| BARHL1 | - | - | 4409 | |
| HES1 | 0.25 | 1 | 5662 | |
| NDST1 | - | - | 5799 | |
| GDF7 | - | - | 7494 | |
| JHDM1D | - | - | 8559 | |
| KDM2B | - | - | 8663 | |
| UQCRQ | - | - | 8688 | |
| HES3 | - | - | 8916 | |
| TAL2 | - | - | 9456 | |
| PITX3 | 0.25 | 1 | 12815 | |
| SHH | - | -1 | 15942 | |
| FZD6 | - | - | 19825 | |
| KAT2A | - | - | 22874 | |
| UCHL5 | - | - | 23734 |
GO:0030901
| Name | Description | External IDs |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| LRP6 | low density lipoprotein receptor-related protein 6 | Entrez:4040  Ensembl: ENSG00000070018  HGNC: 6698  HPRD: 04617  |
| RFX4 | regulatory factor X, 4 (influences HLA class II expression) | Entrez:5992  Ensembl: ENSG00000111783  HGNC: 9985  HPRD: 04905  |
| EN2 | engrailed homeobox 2 | Entrez:2020  HGNC: 3343  HPRD: 08836  Ensembl: ENSG00000164778  |
| OTX2 | orthodenticle homeobox 2 | Entrez:5015  HGNC: 8522  HPRD: 07190  Ensembl: ENSG00000165588  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| LRP6 | low density lipoprotein receptor-related protein 6 | ||||
| RFX4 | regulatory factor X, 4 (influences HLA class II expression) | ||||
| EN2 | engrailed homeobox 2 | ||||
| OTX2 | orthodenticle homeobox 2 |
| Query gene | Gene | Gene description | Edge score |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| LRP6 | LRP6 | low density lipoprotein receptor-related protein 6 | |
| RFX4 | RFX4 | regulatory factor X, 4 (influences HLA class II expression) | |
| EN2 | EN2 | engrailed homeobox 2 | |
| OTX2 | OTX2 | orthodenticle homeobox 2 |