| Gene | Input weight | Standard | Rank | |
| SOX11 | - | - | 66 | |
| SATB2 | 0.25 | 1 | 108 | |
| FGFR2 | - | -1 | 165 | |
| SFRP1 | - | - | 204 | |
| RUNX2 | - | -1 | 209 | |
| PDGFRA | - | -1 | 233 | |
| FGF9 | - | - | 241 | |
| MEF2C | 0.25 | 1 | 248 | |
| NFIB | - | - | 271 | |
| RARB | 0.25 | 1 | 325 | |
| MYCN | - | - | 419 | |
| GNAQ | - | - | 490 | |
| CDH11 | - | - | 496 | |
| SP3 | - | - | 536 | |
| SHOX | - | - | 559 | |
| NIPBL | - | -1 | 561 | |
| SOX4 | - | - | 581 | |
| CHRD | - | - | 697 | |
| SCHIP1 | - | - | 738 | |
| NAB1 | - | - | 765 | |
| COL9A1 | - | - | 768 | |
| LRP6 | - | - | 778 | |
| HOXD3 | - | - | 785 | |
| DLL3 | - | -1 | 816 | |
| PBX1 | - | - | 823 | |
| UFD1L | - | - | 848 | |
| CHD7 | - | -1 | 857 | |
| RPS6KA3 | - | - | 861 | |
| HDAC4 | - | - | 963 | |
| BMP7 | - | - | 987 | |
| HIF1A | - | - | 1008 | |
| PRDX1 | - | - | 1013 | |
| WNT10B | - | - | 1030 | |
| RUNX1 | - | -1 | 1041 | |
| SOX9 | - | -1 | 1045 | |
| TRPS1 | - | -1 | 1089 | |
| WNT2B | - | - | 1126 | |
| HOXD4 | - | - | 1131 | |
| GDF10 | - | - | 1138 | |
| DLX2 | 0.25 | 1 | 1235 | |
| PTHLH | - | -1 | 1269 | |
| COL9A2 | - | - | 1311 | |
| ETS2 | - | - | 1379 | |
| PCGF2 | - | - | 1393 | |
| MSX2 | - | -1 | 1405 | |
| FBN2 | - | - | 1425 | |
| INSIG1 | - | - | 1440 | |
| PRRX1 | - | - | 1491 | |
| SMAD3 | - | - | 1541 | |
| AES | - | - | 1548 | |
| NAB2 | - | - | 1559 | |
| FGFR3 | - | -1 | 1648 | |
| ACVR2A | - | - | 1768 | |
| LECT1 | - | - | 1837 | |
| LHX1 | - | - | 1926 | |
| SOX6 | - | - | 1939 | |
| HOXB8 | - | - | 1971 | |
| HOXD1 | - | - | 1980 | |
| IGF1 | 0.25 | 1 | 1993 | |
| PAX7 | - | -1 | 2033 | |
| NKX3-2 | - | - | 2048 | |
| TBX1 | 0.25 | 1 | 2049 | |
| BMPR1A | - | - | 2059 | |
| RBP4 | - | - | 2097 | |
| SHOX2 | - | - | 2149 | |
| BMI1 | - | - | 2175 | |
| NODAL | - | -1 | 2184 | |
| HOXD9 | - | - | 2201 | |
| DSCAML1 | - | - | 2267 | |
| FOXD3 | - | - | 2272 | |
| GNAS | - | -1 | 2352 | |
| DLX5 | - | - | 2361 | |
| DLX1 | 0.25 | 1 | 2366 | |
| BMPR1B | - | -1 | 2397 | |
| TFAP2A | - | -1 | 2460 | |
| FGFR1 | - | - | 2550 | |
| COL11A1 | 0.25 | 1 | 2558 | |
| WHSC1 | - | - | 2663 | |
| HOXB5 | - | - | 2669 | |
| EXTL1 | - | - | 2767 | |
| HOXC8 | - | - | 2815 | |
| ALX3 | - | - | 2844 | |
| HOXD10 | - | - | 2845 | |
| WNT5A | - | - | 2870 | |
| DEAF1 | - | - | 2911 | |
| AMELX | - | -1 | 2925 | |
| ALX1 | - | - | 2966 | |
| TLL1 | - | -1 | 3014 | |
| LRRC17 | - | - | 3094 | |
| PTH1R | - | - | 3098 | |
| ZFAND5 | - | - | 3126 | |
| GNA11 | - | - | 3167 | |
| ACVR2B | - | -1 | 3179 | |
| INHA | - | - | 3229 | |
| BMP6 | - | - | 3242 | |
| ANKH | - | - | 3279 | |
| SULF1 | - | - | 3312 | |
| CYP19A1 | 0.25 | 1 | 3314 | |
| GDF11 | - | - | 3345 | |
| COL2A1 | - | -1 | 3352 | |
| LECT2 | - | - | 3370 | |
| DLX6 | 0.25 | 1 | 3405 | |
| MEPE | - | - | 3415 | |
| KLF10 | - | - | 3421 | |
| RSPO2 | - | - | 3476 | |
| HOXA3 | - | - | 3502 | |
| HOXD12 | 0.25 | 1 | 3510 | |
| COL12A1 | - | - | 3549 | |
| HOXA13 | - | - | 3602 | |
| HOXB6 | - | - | 3623 | |
| BMP2 | - | -1 | 3686 | |
| SRD5A1 | 0.25 | 1 | 3730 | |
| HOXA2 | - | - | 3750 | |
| SFRP2 | - | - | 3758 | |
| NPR3 | - | - | 3798 | |
| COL19A1 | - | - | 3821 | |
| TBX3 | - | - | 3843 | |
| EXT1 | 0.25 | 1 | 3907 | |
| ZBTB16 | - | - | 3976 | |
| EN1 | - | - | 3999 | |
| TBX15 | - | - | 4012 | |
| BMP5 | - | - | 4051 | |
| HOXA7 | - | - | 4063 | |
| TIPARP | - | - | 4069 | |
| CBS | 0.25 | 1 | 4080 | |
| BMP3 | - | - | 4142 | |
| FOXL1 | - | - | 4171 | |
| HOXA11 | - | - | 4215 | |
| SKI | - | - | 4231 | |
| BMP8A | - | - | 4315 | |
| PHEX | - | -1 | 4326 | |
| HOXD13 | 0.25 | 1 | 4465 | |
| CDX1 | - | - | 4523 | |
| WNT11 | - | - | 4528 | |
| GDF5 | - | -1 | 4557 | |
| GH1 | - | - | 4570 | |
| SPP2 | - | - | 4612 | |
| HOXC4 | - | - | 4616 | |
| SIX4 | - | - | 4623 | |
| PAPSS1 | - | - | 4665 | |
| FGF8 | - | -1 | 4677 | |
| MAPK14 | - | - | 4729 | |
| FGF18 | - | - | 4736 | |
| IHH | - | -1 | 4742 | |
| FGF4 | - | - | 4827 | |
| MMP13 | - | -1 | 4872 | |
| DBH | 0.25 | 1 | 4946 | |
| WWOX | - | -1 | 5122 | |
| BMP4 | - | -1 | 5180 | |
| PRELP | - | - | 5229 | |
| FOXD1 | - | - | 5256 | |
| COL10A1 | - | -1 | 5273 | |
| TGFB3 | - | -1 | 5321 | |
| ALX4 | - | - | 5466 | |
| PTH | - | - | 5481 | |
| ATP7A | - | -1 | 5491 | |
| FOXD2 | - | - | 5493 | |
| TRAPPC2 | - | - | 5535 | |
| HOXD11 | 0.25 | 1 | 5555 | |
| HOXB3 | - | - | 5705 | |
| GLI2 | - | -1 | 5731 | |
| NDST1 | - | - | 5799 | |
| HOXA6 | - | - | 5800 | |
| SMO | 0.25 | 1 | 5864 | |
| AXIN2 | - | -1 | 5927 | |
| GAS1 | - | - | 5960 | |
| SULF2 | - | - | 5996 | |
| RARA | 0.25 | 1 | 6024 | |
| TGFBR1 | - | -1 | 6027 | |
| OTOR | - | - | 6057 | |
| MEF2A | - | - | 6060 | |
| MAPK3 | 0.25 | 1 | 6096 | |
| POSTN | - | - | 6100 | |
| BARX2 | - | - | 6105 | |
| GJA5 | - | - | 6124 | |
| TWIST1 | - | -1 | 6128 | |
| FBN1 | - | -1 | 6138 | |
| NPR2 | - | -1 | 6150 | |
| MYF5 | - | - | 6153 | |
| OSR1 | - | - | 6192 | |
| CTNNB1 | 0.25 | 1 | 6229 | |
| WNT7A | - | - | 6375 | |
| SH3PXD2B | - | - | 6529 | |
| HOXD8 | - | - | 6575 | |
| ADAMTS4 | - | - | 6620 | |
| GUSBP1 | - | - | 6624 | |
| KIAA1217 | - | - | 6637 | |
| ARSE | - | - | 6675 | |
| SIX2 | - | - | 6713 | |
| MEN1 | - | -1 | 6723 | |
| HES7 | - | -1 | 6789 | |
| HOXA5 | - | - | 7014 | |
| PAX1 | - | - | 7124 | |
| SMAD2 | - | - | 7224 | |
| FOXD4L1 | - | - | 7290 | |
| ACAN | - | -1 | 7316 | |
| CHST11 | - | - | 7380 | |
| NPPC | - | - | 7442 | |
| EBP | - | - | 7482 | |
| CHRDL2 | - | - | 7648 | |
| NOG | - | -1 | 7650 | |
| WNT7B | - | - | 7693 | |
| RAI1 | - | - | 7890 | |
| BMP8B | - | - | 7971 | |
| ALPL | - | -1 | 8001 | |
| GSC | - | - | 8075 | |
| FOXC2 | - | - | 8308 | |
| CLEC3A | - | - | 8316 | |
| AHSG | - | - | 8418 | |
| CARM1 | - | - | 8421 | |
| WNT9B | - | - | 8495 | |
| TULP3 | - | - | 8569 | |
| IL17F | - | - | 8673 | |
| TBX4 | - | - | 8883 | |
| ACD | - | - | 8986 | |
| HOXB4 | - | - | 8992 | |
| GLI3 | - | -1 | 9032 | |
| COL13A1 | - | - | 9254 | |
| ANXA2 | - | - | 9301 | |
| GHRL | 0.25 | 1 | 9333 | |
| GDF3 | - | -1 | 9473 | |
| FRZB | - | - | 9553 | |
| EDN1 | - | - | 9566 | |
| RDH10 | - | - | 9600 | |
| MATN3 | - | - | 9620 | |
| FGF2 | - | - | 9627 | |
| TGFBR2 | - | -1 | 9756 | |
| FOXD4 | - | - | 9835 | |
| SUFU | - | -1 | 9989 | |
| GHR | - | -1 | 10058 | |
| FOXD4L4 | - | - | 10472 | |
| HOXB7 | - | - | 10514 | |
| DLG1 | - | - | 10557 | |
| FUZ | - | - | 10698 | |
| AXIN1 | - | -1 | 10905 | |
| FGF6 | - | - | 10907 | |
| RARG | 0.25 | 1 | 10956 | |
| EVC | - | -1 | 11125 | |
| PLEKHA1 | - | - | 11683 | |
| WNT5B | - | - | 11732 | |
| MDFI | - | - | 11799 | |
| TRAPPC2P1 | - | - | 11870 | |
| GDF2 | - | - | 11942 | |
| CMKLR1 | - | - | 11967 | |
| PCSK5 | - | - | 12160 | |
| DSPP | - | -1 | 12361 | |
| INSIG2 | - | - | 12416 | |
| SP1 | - | - | 12422 | |
| PRKRA | - | - | 12617 | |
| TAPT1 | - | - | 12643 | |
| RYK | - | - | 12768 | |
| TCF15 | - | - | 12874 | |
| COMP | - | -1 | 12929 | |
| TNFRSF11B | - | - | 13020 | |
| SERP1 | - | - | 13167 | |
| LEP | 0.25 | 1 | 13368 | |
| TGFBI | - | - | 13688 | |
| FGFRL1 | - | - | 13718 | |
| UNCX | - | - | 13746 | |
| WNT9A | - | - | 14123 | |
| COL3A1 | - | -1 | 14131 | |
| EPHA2 | - | -1 | 14150 | |
| TWIST2 | - | - | 14594 | |
| PAPSS2 | - | - | 14696 | |
| TGFB1 | 0.25 | 1 | 14736 | |
| IDUA | - | -1 | 14893 | |
| CSRNP1 | - | - | 15071 | |
| SIX1 | - | -1 | 15117 | |
| HSD17B2 | 0.25 | 1 | 15720 | |
| SHH | - | -1 | 15942 | |
| PPARGC1B | - | -1 | 16411 | |
| FOXD4L5 | - | - | 16935 | |
| LRP5 | - | -1 | 16985 | |
| FOXD4L2 | - | - | 17995 | |
| IQCJ-SCHIP1 | - | - | 18546 | |
| OSR2 | - | - | 18904 | |
| COL1A2 | - | -1 | 19210 | |
| FOXD4L6 | - | - | 19463 | |
| CYR61 | - | - | 19764 | |
| CLEC3B | - | - | 19936 | |
| HOXB2 | - | - | 20191 | |
| VDR | - | - | 20212 | |
| PSEN1 | - | - | 20241 | |
| COL11A2 | - | -1 | 20316 | |
| EIF2AK3 | - | - | 20407 | |
| SGPL1 | - | - | 20483 | |
| CREB3L2 | - | - | 20825 | |
| PRKRAP1 | - | - | 21445 | |
| SBDS | - | - | 21855 | |
| BGLAP | - | - | 21911 | |
| ESRRA | - | - | 22220 | |
| FBXW4 | - | - | 22341 | |
| GLG1 | - | - | 22724 | |
| FOXC1 | - | -1 | 22868 | |
| LGALS3 | - | - | 22939 | |
| MGP | - | - | 22959 | |
| PITX1 | 0.25 | 1 | 23078 | |
| TYMS | - | - | 23100 | |
| IGFBP4 | - | - | 23101 | |
| IGF2 | 0.25 | 1 | 23391 | |
| PRRX2 | - | - | 23414 | |
| MMP9 | - | - | 23766 | |
| LUM | - | - | 24067 | |
| TP63 | - | -1 | 24113 | |
| THBS3 | - | - | 24201 | |
| TCOF1 | - | -1 | 24488 | |
| COL1A1 | - | -1 | 24560 | |
| ACP2 | - | - | 24633 | |
| IMPAD1 | - | - | 24769 | |
| ACP5 | - | - | 24802 | |
| AEBP1 | - | - | 24851 | |
| MMP2 | - | - | 24926 | |
| BMP1 | - | - | 25016 | |
| TEAD4 | - | - | 25169 | |
| PEX7 | 0.25 | 1 | 25180 | |
| WDR5 | - | - | 25218 | |
| HEXB | - | -1 | 25438 |
GO:0001501
| Name | Description | External IDs |
| SOX11 | SRY (sex determining region Y)-box 11 | Entrez:6664  HGNC: 11191  Ensembl: ENSG00000176887  HPRD: 02940  |
| SATB2 | SATB homeobox 2 | Entrez:23314  Ensembl: ENSG00000119042  HPRD: 12178  HGNC: 21637  |
| FGFR2 | fibroblast growth factor receptor 2 | Entrez:2263  HPRD: 01492  Ensembl: ENSG00000066468  HGNC: 3689  |
| SFRP1 | secreted frizzled-related protein 1 | Entrez:6422  HPRD: 09165  Ensembl: ENSG00000104332  HGNC: 10776  |
| RUNX2 | runt-related transcription factor 2 | Entrez:860  Ensembl: ENSG00000124813  HGNC: 10472  HPRD: 02566  |
| Geneset | Type | Freq. (Network vs Genome) | P-Value (FDR Corrected) | Genes |
| Gene | Description | Avg. edge score to query | Rank | In geneset | In query |
| SOX11 | SRY (sex determining region Y)-box 11 | ||||
| SATB2 | SATB homeobox 2 | ||||
| FGFR2 | fibroblast growth factor receptor 2 | ||||
| SFRP1 | secreted frizzled-related protein 1 | ||||
| RUNX2 | runt-related transcription factor 2 |
| Query gene | Gene | Gene description | Edge score |
| SOX11 | SOX11 | SRY (sex determining region Y)-box 11 | |
| SATB2 | SATB2 | SATB homeobox 2 | |
| FGFR2 | FGFR2 | fibroblast growth factor receptor 2 | |
| SFRP1 | SFRP1 | secreted frizzled-related protein 1 | |
| RUNX2 | RUNX2 | runt-related transcription factor 2 |